Detailed information NTG0679690

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OBG92_RS16555
• Genome accession: NZ_CP109657
• Coordinates: 3556018..3557298 (-)
• Length: 426 a.a.
• NCBI ID: WP_003087924.1
• Uniprot ID: Q02KU5
• Organism: Pseudomonas aeruginosa strain Zw26
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 3551018..3562298

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OBG92_RS16545 (OBG92_03253)	hupB	3553082..3553354 (-)	273	WP_003087931.1	nucleoid-associated protein HU-beta	-
OBG92_RS16550 (OBG92_03254)	lon	3553490..3555886 (-)	2397	WP_058145419.1	endopeptidase La	-
OBG92_RS16555 (OBG92_03255)	clpX	3556018..3557298 (-)	1281	WP_003087924.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OBG92_RS16560 (OBG92_03256)	clpP	3557403..3558044 (-)	642	WP_003153591.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
OBG92_RS16565 (OBG92_03257)	tig	3558137..3559447 (-)	1311	WP_043103119.1	trigger factor	-
OBG92_RS16570 (OBG92_03258)	parR	3559675..3560382 (+)	708	WP_012076173.1	response regulator transcription factor ParR	-
OBG92_RS16575 (OBG92_03259)	parS	3560383..3561669 (+)	1287	WP_034080099.1	sensor histidine kinase ParS	-

Sequence

Protein

• Length: 426 a.a.
• Molecular weight: 46991.78 Da
• Isoelectric Point: 4.8347

>NTDB_id=679690 OBG92_RS16555 WP_003087924.1 3556018..3557298(-) (clpX) [Pseudomonas aeruginosa strain Zw26]
MTDTRNGEDNGKLLYCSFCGKSQHEVRKLIAGPSVFICDECVDLCNDIIREEVQEAQAESSGHKLPAPKEIRTILDQYVI
GQERAKKVLAVAVYNHYKRLNQRDKKDDIELGKSNILMIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVE
NIIQKLLQKCDYDVEKAQMGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVD
TRNILFICGGAFAGLERVIQNRSARGGIGFNAEVRSQEMGKKVGEAFKEVEPEDLVKFGLIPEFVGRLPVIATLDELDEA
ALMQILTEPKNALTKQYAKLFEMEGVDLEFRPDALKAVARKALERKTGARGLRSILEGILLDTMYEIPSQQDVSKVVIDE
SVIDGSSQPLMIYENSEKPAKAAPEA

Nucleotide

• Length: 1281 bp

>NTDB_id=679690 OBG92_RS16555 WP_003087924.1 3556018..3557298(-) (clpX) [Pseudomonas aeruginosa strain Zw26]
ATGACTGATACCCGCAACGGCGAGGACAACGGCAAGCTGCTGTATTGCTCCTTCTGCGGCAAGAGCCAGCACGAAGTGCG
CAAGTTGATTGCCGGCCCCTCGGTCTTTATCTGCGACGAGTGTGTCGACCTGTGCAATGACATCATCCGCGAGGAGGTGC
AGGAAGCGCAGGCGGAAAGTAGTGGGCACAAACTTCCGGCGCCGAAAGAGATCCGCACCATCCTCGATCAGTACGTGATC
GGGCAGGAGCGGGCGAAGAAGGTTCTGGCGGTAGCGGTGTACAACCACTACAAGCGCCTCAACCAGCGTGACAAGAAGGA
CGATATCGAGCTCGGCAAGAGCAACATTCTGATGATCGGCCCAACCGGCTCGGGCAAGACCCTGCTGGCCGAGACCCTCG
CGCGCCTGCTGAACGTGCCGTTCACCATCGCCGACGCGACCACGCTGACGGAAGCCGGCTATGTGGGCGAGGATGTCGAG
AACATCATCCAGAAACTCCTGCAGAAATGCGACTACGATGTGGAAAAGGCCCAGATGGGTATCGTCTACATCGACGAGAT
CGACAAGATTTCCCGCAAGTCGGATAACCCTTCCATCACTCGCGACGTCTCCGGCGAGGGTGTGCAGCAGGCCTTGCTGA
AGCTCATCGAGGGCACTGTCGCCTCGGTGCCGCCGCAAGGTGGCCGCAAGCATCCGCAGCAGGAATTCCTGCAAGTCGAT
ACGCGTAACATCCTGTTCATCTGCGGCGGCGCTTTCGCCGGCCTGGAGCGGGTCATCCAGAACCGTTCCGCGCGCGGCGG
CATCGGCTTCAATGCCGAGGTGCGCAGCCAGGAAATGGGCAAGAAGGTCGGCGAGGCGTTCAAGGAGGTCGAGCCGGAGG
ATCTGGTCAAGTTCGGCCTGATCCCGGAGTTTGTCGGCCGTTTGCCGGTAATCGCCACGCTCGACGAACTCGACGAGGCT
GCCCTGATGCAGATCCTCACCGAGCCGAAGAACGCGCTCACCAAGCAATACGCCAAGCTGTTCGAGATGGAAGGCGTCGA
TCTCGAGTTCCGCCCGGACGCCCTCAAGGCCGTGGCCCGCAAGGCGCTCGAGCGCAAGACCGGCGCACGCGGCTTGCGTT
CCATTCTCGAAGGTATTCTTCTGGATACCATGTACGAGATTCCCTCCCAGCAGGATGTCAGCAAGGTGGTCATCGATGAG
AGTGTCATCGATGGTTCGTCGCAACCCCTGATGATCTACGAGAACAGCGAAAAGCCAGCCAAGGCTGCGCCTGAGGCATG
A

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (14-51)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (317-395)

• AAA domain (Cdc48 subfamily) (AAA_2) (113-311)

3D structure

• AlphaFold DB: Q02KU5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	60.934	95.54	0.582
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.198	94.836	0.523