Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   M0D45_RS05625 Genome accession   NZ_CP096139
Coordinates   1365441..1366895 (+) Length   484 a.a.
NCBI ID   WP_313905392.1    Uniprot ID   -
Organism   Xanthomonas prunicola strain MAI5069     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1360441..1371895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0D45_RS05605 (M0D45_05595) - 1360484..1360855 (-) 372 WP_252162277.1 DUF559 domain-containing protein -
  M0D45_RS05610 (M0D45_05600) sucD 1361256..1362131 (-) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  M0D45_RS05615 (M0D45_05605) sucC 1362156..1363325 (-) 1170 WP_101361865.1 ADP-forming succinate--CoA ligase subunit beta -
  M0D45_RS05620 (M0D45_05610) - 1363557..1365170 (+) 1614 WP_260817738.1 HAMP domain-containing sensor histidine kinase -
  M0D45_RS05625 (M0D45_05615) pilR 1365441..1366895 (+) 1455 WP_313905392.1 sigma-54 dependent transcriptional regulator Regulator
  M0D45_RS05630 (M0D45_05620) - 1367193..1367312 (-) 120 WP_101362453.1 pilus assembly protein -
  M0D45_RS05635 (M0D45_05625) pilB 1367380..1369116 (-) 1737 WP_260817739.1 type IV-A pilus assembly ATPase PilB Machinery gene
  M0D45_RS05640 (M0D45_05630) - 1369209..1369817 (-) 609 WP_260817740.1 methionine biosynthesis protein MetW -
  M0D45_RS05645 (M0D45_05635) - 1369810..1370844 (-) 1035 WP_260818124.1 glycosyltransferase -
  M0D45_RS05650 (M0D45_05640) - 1370847..1371644 (-) 798 WP_260817741.1 glycosyltransferase family A protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52470.20 Da        Isoelectric Point: 6.9343

>NTDB_id=679616 M0D45_RS05625 WP_313905392.1 1365441..1366895(+) (pilR) [Xanthomonas prunicola strain MAI5069]
MSRNPVDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPAPPPEQASR
LLGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHGHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAATPGSAAVEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=679616 M0D45_RS05625 WP_313905392.1 1365441..1366895(+) (pilR) [Xanthomonas prunicola strain MAI5069]
GTGAGCCGCAACCCGGTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGGCTGCGCATCAGCACCG
CCGCCAATCTGGCCGAAGCCCGCGAATTGCTGGCGAACAATCCCTACGATCTGTGCCTGACCGACATGCGCTTGCCTGAC
GGCAATGGCATCGAACTGGTCACCGAAATCGCCAGACAGTACCCGCAGACCCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCAGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTCCTGCGCG
GCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGCCCCGCCCCGCCCGCGCCACCACCGGAACAGGCCAGCCGC
CTGCTCGGCGACTCCAGCGCCATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGCAGCCAGGCGCCGGTTTACAT
CGTCGGTGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAGCAAGGCGCACGTGCCGCCGGCCCGTTCG
TGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGGCTATTCCAGGCCGCCCACGGCGGCACGTTGTTCTTGGACGAAGTGGCCGAATTGCCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGCCCGGTTGGCGCCTCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTGATCGAACTGCGCGTGCCACCGCTGCGCGAACGCGGCGGCGACTTGCCGCAACTGGCCGCTGCCATCAT
CGCGCGCCTGGCGCACGGTCACGGCCGCCCCATTCCACTGCTGACCCAATCCGCGCTCGACGCATTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTTGCCCTGGCCGAAGACGACCAGATCAGCGCCACC
GACCTGCGCCTGCCTGCCCACGGCGGGCACCGCCTCGCCGCCACGCCCGGCAGCGCCGCCGTCGAACCGCGCGAAGCCGT
GGTCGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAGCAACTGGAACGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGCATCACGTTTCGGGCGCTGCGTTACAAGCTCAAGAAG
TTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Response regulator receiver domain (Response_reg)

(28-134)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.696

95.041

0.605
  pilR Acinetobacter baumannii strain A118

48.922

95.868

0.469