Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   OKF33_RS05105 Genome accession   NZ_CP109654
Coordinates   994654..994959 (+) Length   101 a.a.
NCBI ID   WP_002790525.1    Uniprot ID   -
Organism   Campylobacter coli strain 10-02932     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 989654..999959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKF33_RS05080 rpsR 990013..990273 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  OKF33_RS05085 lon 990329..992704 (-) 2376 WP_002783351.1 endopeptidase La -
  OKF33_RS05090 - 992720..993367 (-) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  OKF33_RS05095 fliW 993531..993920 (+) 390 WP_002777093.1 flagellar assembly protein FliW -
  OKF33_RS05100 proC 993920..994657 (+) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  OKF33_RS05105 ctsT 994654..994959 (+) 306 WP_002790525.1 hypothetical protein Machinery gene
  OKF33_RS05110 - 994952..995620 (+) 669 WP_002780245.1 hypothetical protein -
  OKF33_RS05115 - 995617..996069 (+) 453 WP_002777117.1 hypothetical protein -
  OKF33_RS05120 - 996062..996691 (-) 630 WP_002783358.1 uroporphyrinogen-III synthase -
  OKF33_RS05125 thiE 996669..997301 (-) 633 WP_002777120.1 thiamine phosphate synthase -
  OKF33_RS05130 thiD 997291..998103 (-) 813 WP_002786353.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  OKF33_RS05135 - 998103..998786 (-) 684 WP_264306011.1 3-methyladenine DNA glycosylase -
  OKF33_RS05140 - 998783..999544 (-) 762 WP_025431509.1 ATP-binding protein -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 12410.27 Da        Isoelectric Point: 6.0617

>NTDB_id=679616 OKF33_RS05105 WP_002790525.1 994654..994959(+) (ctsT) [Campylobacter coli strain 10-02932]
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFINDN
IFQFKKLHIQNQDYSLYFYDE

Nucleotide


Download         Length: 306 bp        

>NTDB_id=679616 OKF33_RS05105 WP_002790525.1 994654..994959(+) (ctsT) [Campylobacter coli strain 10-02932]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTATAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

48.98

97.03

0.475