Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   MZO21_RS05360 Genome accession   NZ_CP096120
Coordinates   1070863..1071564 (-) Length   233 a.a.
NCBI ID   WP_154772197.1    Uniprot ID   -
Organism   Acinetobacter portensis strain JNE5     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1065863..1076564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZO21_RS05340 (MZO21_05340) - 1066854..1068173 (+) 1320 WP_154772201.1 adenylosuccinate synthase -
  MZO21_RS05345 (MZO21_05345) - 1068327..1068635 (+) 309 WP_154772200.1 hypothetical protein -
  MZO21_RS05350 (MZO21_05350) - 1068739..1069521 (+) 783 WP_154772199.1 M48 family metallopeptidase -
  MZO21_RS05355 (MZO21_05355) - 1069637..1070686 (-) 1050 WP_154772198.1 NADP(H)-dependent aldo-keto reductase -
  MZO21_RS05360 (MZO21_05360) crp 1070863..1071564 (-) 702 WP_154772197.1 cAMP-activated global transcriptional regulator CRP Regulator
  MZO21_RS05365 (MZO21_05365) - 1071710..1072132 (+) 423 WP_154772196.1 OsmC family protein -
  MZO21_RS05370 (MZO21_05370) clpB 1072455..1075034 (+) 2580 WP_154772195.1 ATP-dependent chaperone ClpB -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26162.79 Da        Isoelectric Point: 4.7986

>NTDB_id=679567 MZO21_RS05360 WP_154772197.1 1070863..1071564(-) (crp) [Acinetobacter portensis strain JNE5]
MTSNFSQLSTDALSPGQLPDSVKALLKRAYINRYPKRTTIIDSGSESKSLYLILKGSVSIILREDDDREIVVAYLNPGDF
FGEMGLFESNPQRTAEVRTRDVCEIAEVTYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEAVEDAYADAEQ

Nucleotide


Download         Length: 702 bp        

>NTDB_id=679567 MZO21_RS05360 WP_154772197.1 1070863..1071564(-) (crp) [Acinetobacter portensis strain JNE5]
ATGACTTCAAATTTTTCACAACTAAGCACCGATGCCCTTTCTCCGGGTCAATTGCCTGACTCAGTTAAAGCATTACTAAA
ACGTGCATATATTAATCGTTATCCTAAACGTACAACAATTATTGACTCGGGGTCAGAATCTAAATCTTTATACTTAATTC
TTAAAGGTTCTGTATCAATCATTCTTCGTGAAGATGATGACCGTGAAATTGTTGTTGCGTATTTGAATCCTGGGGACTTT
TTTGGGGAAATGGGTCTATTCGAATCAAATCCACAACGTACTGCAGAAGTTCGCACACGTGACGTTTGTGAAATTGCCGA
AGTGACTTACGAAAACTTCCATGAACTTAGCAAGCAATATCCTGACTTAAGCTATGCAGTATTTGCTCAATTAGTTCGTC
GCTTAAAAAATACTACACGTAAAGTAACTGACTTAGCATTTATTGATGTGTCTGGTCGTATTGCACGTTGTTTGATTGAC
CTTTCATCTCAGCCTGAGGCGATGATTTTACCGAATGGTCGTCAAATCCGCATTACACGTCAAGAAATTGGTCGCATTGT
AGGTTGTTCACGTGAAATGGTTGGTCGTGTTCTTAAAACATTAGAAGAACAAGGCATGATCGAAACTGATGGTAAAGCAA
TTTTAATCTTCGATGCTTCTTTAGAAGCAGTTGAAGATGCTTATGCAGATGCTGAACAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

90.213

100

0.91
  crp Vibrio cholerae strain A1552

46.829

87.983

0.412
  crp Haemophilus influenzae Rd KW20

47.179

83.691

0.395