Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   MZN68_RS08085 Genome accession   NZ_CP096117
Coordinates   1605492..1605956 (-) Length   154 a.a.
NCBI ID   WP_011798959.1    Uniprot ID   -
Organism   Neisseria meningitidis strain DFS-1910310016     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1598790..1616007 1605492..1605956 within 0


Gene organization within MGE regions


Location: 1598790..1616007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZN68_RS08030 - 1598790..1599272 (-) 483 WP_061729868.1 hypothetical protein -
  MZN68_RS08035 - 1599399..1599560 (-) 162 WP_153559544.1 hypothetical protein -
  MZN68_RS08040 (MZN68_07940) - 1600510..1600755 (-) 246 WP_002224299.1 hypothetical protein -
  MZN68_RS08045 (MZN68_07945) - 1600867..1601295 (+) 429 WP_002212270.1 CopD family protein -
  MZN68_RS08050 (MZN68_07950) - 1601307..1601783 (+) 477 WP_002224298.1 CYTH domain-containing protein -
  MZN68_RS08055 (MZN68_07955) - 1602133..1602621 (-) 489 WP_002224297.1 dihydrofolate reductase -
  MZN68_RS08060 (MZN68_07960) aroG 1602689..1603744 (-) 1056 WP_002216371.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  MZN68_RS08065 (MZN68_07965) - 1603906..1604133 (-) 228 WP_153310284.1 hypothetical protein -
  MZN68_RS08070 (MZN68_07970) - 1604356..1604664 (+) 309 WP_076612699.1 hypothetical protein -
  MZN68_RS08075 (MZN68_07975) - 1604713..1604817 (-) 105 Protein_1570 IS1595 family transposase -
  MZN68_RS08080 - 1604989..1605123 (-) 135 WP_256864600.1 hypothetical protein -
  MZN68_RS08085 (MZN68_07980) comE 1605492..1605956 (-) 465 WP_011798959.1 ComEA family DNA-binding protein Machinery gene
  MZN68_RS08115 (MZN68_08010) - 1611754..1612560 (-) 807 WP_076612651.1 inner membrane protein YpjD -
  MZN68_RS08120 (MZN68_08015) ffh 1612781..1614151 (+) 1371 WP_076612650.1 signal recognition particle protein -
  MZN68_RS08125 (MZN68_08020) dsbA2 1614482..1615177 (-) 696 WP_002215704.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  MZN68_RS08130 (MZN68_08025) - 1615348..1616007 (-) 660 WP_002218694.1 NYN domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16563.76 Da        Isoelectric Point: 10.8773

>NTDB_id=679516 MZN68_RS08085 WP_011798959.1 1605492..1605956(-) (comE) [Neisseria meningitidis strain DFS-1910310016]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPALPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=679516 MZN68_RS08085 WP_011798959.1 1605492..1605956(-) (comE) [Neisseria meningitidis strain DFS-1910310016]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGCGCGCCCGCACCAAAAGGCCCGGCAAAACCGGCTCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74