Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   M0D62_RS07860 Genome accession   NZ_CP096114
Coordinates   1644295..1644996 (-) Length   233 a.a.
NCBI ID   WP_080724742.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain MRSA-139-14-168     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1639295..1649996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0D62_RS07840 (M0D62_07830) rpsT 1640204..1640455 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  M0D62_RS07845 (M0D62_07835) holA 1640505..1641479 (-) 975 WP_047434517.1 DNA polymerase III subunit delta -
  M0D62_RS07850 (M0D62_07840) comEC 1641536..1643737 (-) 2202 WP_047434516.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  M0D62_RS07855 (M0D62_07845) - 1643742..1644203 (-) 462 WP_000439693.1 ComE operon protein 2 -
  M0D62_RS07860 (M0D62_07850) comEA 1644295..1644996 (-) 702 WP_080724742.1 ComEA family DNA-binding protein Machinery gene
  M0D62_RS07865 (M0D62_07855) - 1645036..1645752 (-) 717 WP_047434511.1 class I SAM-dependent methyltransferase -
  M0D62_RS07870 (M0D62_07860) rsfS 1645755..1646108 (-) 354 WP_001088023.1 ribosome silencing factor -
  M0D62_RS07875 (M0D62_07865) yqeK 1646109..1646693 (-) 585 WP_047434507.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  M0D62_RS07880 (M0D62_07870) - 1646683..1647252 (-) 570 WP_047434502.1 nicotinate-nucleotide adenylyltransferase -
  M0D62_RS07885 (M0D62_07875) yhbY 1647255..1647545 (-) 291 WP_000955238.1 ribosome assembly RNA-binding protein YhbY -
  M0D62_RS07890 (M0D62_07880) aroE 1647550..1648356 (-) 807 WP_047434498.1 shikimate dehydrogenase -
  M0D62_RS07895 (M0D62_07885) yqeH 1648369..1649469 (-) 1101 WP_001280131.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26377.05 Da        Isoelectric Point: 9.6751

>NTDB_id=679420 M0D62_RS07860 WP_080724742.1 1644295..1644996(-) (comEA) [Staphylococcus argenteus strain MRSA-139-14-168]
MVLLYQFLLRYKDFFNQWKLYIISAVVLIMLLIGFIFWRQDEYTARDFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYIDVKGAVKHPNVYKMTSKDRVIDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHAKN
GNTNNGNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFRT

Nucleotide


Download         Length: 702 bp        

>NTDB_id=679420 M0D62_RS07860 WP_080724742.1 1644295..1644996(-) (comEA) [Staphylococcus argenteus strain MRSA-139-14-168]
GTGGTTTTGTTGTATCAATTTTTATTACGCTATAAAGATTTTTTCAATCAATGGAAGTTATATATTATAAGTGCAGTTGT
TTTAATTATGTTATTAATAGGTTTTATATTCTGGAGACAAGATGAATATACTGCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATATCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AATTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTTATACCTCATAAAGGACAAAAGAACGTTGAACCACAAATTGGAGTAAATAGTGTGCACGCAAAAAAT
GGGAACACAAATAATGGGAACACAAATAATACTAAAGTAAATCTAAATACGGCATCTGTATCTGAATTGATGTCTGTTCC
TGGAGTAGGTCAAGCTAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGATGATTTGA
AAAAAGTAAAAGGTTTTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCAGGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(169-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

92.641

99.142

0.918
  comEA Staphylococcus aureus N315

92.641

99.142

0.918