Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   M0D62_RS07850 Genome accession   NZ_CP096114
Coordinates   1641536..1643737 (-) Length   733 a.a.
NCBI ID   WP_047434516.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain MRSA-139-14-168     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1636536..1648737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0D62_RS07830 (M0D62_07820) hemW 1636707..1637831 (-) 1125 WP_000216825.1 radical SAM family heme chaperone HemW -
  M0D62_RS07835 (M0D62_07825) lepA 1638035..1639858 (-) 1824 WP_000356945.1 translation elongation factor 4 -
  M0D62_RS07840 (M0D62_07830) rpsT 1640204..1640455 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  M0D62_RS07845 (M0D62_07835) holA 1640505..1641479 (-) 975 WP_047434517.1 DNA polymerase III subunit delta -
  M0D62_RS07850 (M0D62_07840) comEC 1641536..1643737 (-) 2202 WP_047434516.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  M0D62_RS07855 (M0D62_07845) - 1643742..1644203 (-) 462 WP_000439693.1 ComE operon protein 2 -
  M0D62_RS07860 (M0D62_07850) comEA 1644295..1644996 (-) 702 WP_080724742.1 ComEA family DNA-binding protein Machinery gene
  M0D62_RS07865 (M0D62_07855) - 1645036..1645752 (-) 717 WP_047434511.1 class I SAM-dependent methyltransferase -
  M0D62_RS07870 (M0D62_07860) rsfS 1645755..1646108 (-) 354 WP_001088023.1 ribosome silencing factor -
  M0D62_RS07875 (M0D62_07865) yqeK 1646109..1646693 (-) 585 WP_047434507.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  M0D62_RS07880 (M0D62_07870) - 1646683..1647252 (-) 570 WP_047434502.1 nicotinate-nucleotide adenylyltransferase -
  M0D62_RS07885 (M0D62_07875) yhbY 1647255..1647545 (-) 291 WP_000955238.1 ribosome assembly RNA-binding protein YhbY -
  M0D62_RS07890 (M0D62_07880) aroE 1647550..1648356 (-) 807 WP_047434498.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 84952.96 Da        Isoelectric Point: 10.0778

>NTDB_id=679418 M0D62_RS07850 WP_047434516.1 1641536..1643737(-) (comEC) [Staphylococcus argenteus strain MRSA-139-14-168]
MLYVALSMIVGVLWNSSKVLSTFLFILLLFIAYRKNKIVYAPISLFLIIFSSWYLHYSQQAVFNYINYIERNPQFNERAQ
VIQIQRQDSDTYKGRLSLKNEIYPFFLTDKKNFDLKKIESRNCIVKGQFKVNDNKFVTLKLQSIVVQSCLKSNQSNLIEK
HKQFIMNRIYDSGIKFPNRIMALITGDVKEINEQFKERVKEIGIYHLLAVSGSHIAAIVFLIYQPLKRLNFPLFVIKGIT
IIVLALFAQYTNYAPSAVRAIIMTTLVLLITKQIKIKGIQLLAFAFIIMFILNPLVVYDIGFQFSFIISFFIMLLFPFLQ
QLSKLQSLFIITFIAQLASFIVAIPNFHQLQWVGFLSNLIFVPYYSIILFPLSILFFITSHFIVGLTPLNYFVDLSFNFH
DWLLDLFTRIKQSHFSIPKFNDWIFILFIISVYYIFWLLAKRKYRLVTFWTIIIMTLLITYPTNSHHKITMLNVGQGDSI
LYEGGKNQNVLIDTGGKVINDTKQPSFSISKYHILPTLNERGINELEYLILTHPHNDHIGEVEYIISHIKIKHIVIYNKG
YSSKTLLLLSKLSHKYNIKLMDVRQVSSFKLGDSSFQFFDSFIPNSRDKNEYSIITMITYQNKKALLMGDASKNNESLLL
KKYNLPEIDILKVGHHGSKTSSSKEFIEVIRPKISLISSGKNNMYHLPNIEVVKRLQGIRSRIYNSQQNGEVTIDLDENL
KVDSNSYGNASGL

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=679418 M0D62_RS07850 WP_047434516.1 1641536..1643737(-) (comEC) [Staphylococcus argenteus strain MRSA-139-14-168]
TTGCTGTATGTCGCATTATCAATGATTGTAGGAGTACTTTGGAATTCTAGCAAAGTGCTCTCTACATTTCTTTTCATTTT
ACTTTTGTTTATTGCTTATCGTAAAAATAAAATAGTTTATGCTCCTATTTCTCTCTTTTTAATCATTTTTTCCTCATGGT
ATTTACATTATTCACAACAAGCAGTATTTAATTATATCAATTATATTGAACGTAATCCTCAGTTTAATGAGCGTGCTCAA
GTAATCCAAATTCAACGTCAAGATAGTGACACATATAAAGGTAGGTTGAGTTTAAAGAATGAAATATATCCTTTCTTTTT
AACAGATAAAAAGAATTTTGATTTAAAGAAAATTGAAAGTCGTAATTGTATTGTTAAAGGACAATTCAAAGTTAATGACA
ACAAGTTTGTAACTCTTAAATTACAAAGTATAGTTGTACAAAGCTGTCTAAAATCGAACCAGTCTAATTTAATTGAGAAA
CATAAACAGTTTATAATGAATCGAATTTATGATTCGGGTATTAAGTTTCCAAATCGTATTATGGCATTGATTACTGGTGA
CGTAAAAGAAATTAATGAGCAATTTAAGGAACGTGTTAAAGAGATAGGTATATATCATTTGCTGGCAGTAAGTGGCTCGC
ATATAGCTGCAATCGTATTCTTAATTTACCAACCTTTAAAACGATTAAATTTTCCTTTATTTGTCATTAAAGGAATTACA
ATCATTGTATTAGCTTTGTTTGCTCAATACACAAATTATGCACCTAGTGCTGTAAGAGCTATAATAATGACTACACTAGT
ACTACTTATTACTAAGCAAATTAAAATAAAGGGTATTCAGCTATTAGCATTTGCTTTTATAATTATGTTTATTTTGAATC
CACTAGTTGTTTATGATATTGGATTTCAATTTTCATTCATCATTTCATTTTTTATTATGCTACTTTTTCCTTTTTTACAG
CAATTGTCAAAGTTACAATCATTATTCATAATTACTTTTATTGCACAATTAGCTTCATTTATCGTTGCCATTCCTAACTT
TCATCAACTTCAATGGGTGGGTTTTTTATCTAATTTGATTTTTGTACCGTACTATTCGATTATACTGTTTCCTCTATCAA
TTTTATTCTTTATTACAAGCCATTTTATTGTGGGCTTAACGCCGCTAAATTACTTTGTTGACCTAAGTTTCAATTTTCAT
GATTGGTTACTAGACCTATTCACTCGAATCAAGCAATCACACTTTTCTATTCCTAAGTTTAATGATTGGATATTTATATT
GTTTATAATTTCTGTTTATTACATATTTTGGTTATTGGCTAAACGTAAATATAGATTGGTTACGTTTTGGACTATAATTA
TTATGACATTATTAATAACGTATCCAACAAATTCACATCACAAAATTACAATGTTAAATGTGGGGCAGGGAGATAGTATT
TTATATGAAGGCGGGAAGAACCAAAATGTCTTGATTGATACAGGTGGAAAAGTGATTAATGATACTAAACAACCTAGTTT
TTCAATTTCTAAATATCATATTTTACCAACGCTAAATGAAAGAGGGATAAACGAATTAGAGTATTTAATTTTAACACATC
CACACAATGACCATATTGGTGAAGTAGAATATATTATTAGTCATATTAAAATTAAGCATATAGTGATATACAATAAAGGA
TATAGTAGTAAAACATTGTTGTTATTATCAAAATTAAGCCATAAGTATAACATTAAACTTATGGATGTAAGACAAGTTAG
TAGTTTTAAACTTGGGGATAGTAGTTTTCAATTTTTTGATAGTTTTATTCCAAATAGCCGAGATAAAAATGAATATTCGA
TTATTACTATGATTACATATCAAAATAAAAAAGCTTTATTAATGGGTGATGCTAGTAAAAATAATGAATCTTTACTATTA
AAGAAATATAATTTGCCAGAGATAGATATTTTAAAAGTAGGACATCATGGAAGTAAGACAAGTAGTTCTAAAGAATTTAT
AGAGGTGATTAGGCCTAAAATAAGTTTGATTTCTTCTGGGAAGAACAATATGTATCATCTTCCTAACATAGAAGTTGTTA
AACGATTGCAAGGTATTCGCAGTCGCATTTACAATAGTCAACAAAACGGTGAAGTTACAATAGACTTAGATGAAAATTTA
AAAGTTGATTCAAACTCTTATGGAAATGCAAGTGGTTTATAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(183-441)

Metallo-beta-lactamase superfamily (Lactamase_B)

(474-679)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Staphylococcus aureus N315

96.044

100

0.96
  comEC Staphylococcus aureus MW2

95.634

100

0.956