Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   MY524_RS08865 Genome accession   NZ_CP096017
Coordinates   1953322..1953708 (+) Length   128 a.a.
NCBI ID   WP_250655525.1    Uniprot ID   -
Organism   Alkalimarinus coralli strain SCSIO 12638     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1948322..1958708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY524_RS08840 pyrR 1949317..1949820 (-) 504 WP_250655521.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  MY524_RS08845 ruvX 1949915..1950346 (-) 432 WP_250655522.1 Holliday junction resolvase RuvX -
  MY524_RS08850 - 1950398..1950943 (-) 546 WP_250658831.1 YqgE/AlgH family protein -
  MY524_RS08855 - 1951051..1951914 (-) 864 WP_250655523.1 energy transducer TonB -
  MY524_RS08860 gshB 1952031..1952990 (-) 960 WP_250655524.1 glutathione synthase -
  MY524_RS08865 pilG 1953322..1953708 (+) 387 WP_250655525.1 twitching motility response regulator PilG Regulator
  MY524_RS08870 pilH 1953824..1954186 (+) 363 WP_250655526.1 twitching motility response regulator PilH -
  MY524_RS08875 - 1954207..1954752 (+) 546 WP_250655527.1 chemotaxis protein CheW -
  MY524_RS08880 - 1954886..1956931 (+) 2046 WP_250655528.1 methyl-accepting chemotaxis protein -
  MY524_RS08885 - 1956966..1957859 (+) 894 WP_250655529.1 CheR family methyltransferase -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14163.47 Da        Isoelectric Point: 6.9509

>NTDB_id=679165 MY524_RS08865 WP_250655525.1 1953322..1953708(+) (pilG) [Alkalimarinus coralli strain SCSIO 12638]
MEDNFENLKIMVIDDSKTIRRTAETLLKKVGCTVITATDGFDALAKIADTHPDIIFVDIMMPRLDGYQTCALIKNNSAFK
ATPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKDELLGTIRTYIPAS

Nucleotide


Download         Length: 387 bp        

>NTDB_id=679165 MY524_RS08865 WP_250655525.1 1953322..1953708(+) (pilG) [Alkalimarinus coralli strain SCSIO 12638]
ATGGAAGACAATTTTGAGAACCTGAAAATCATGGTGATTGATGACAGTAAGACTATTCGTCGTACTGCGGAGACACTATT
AAAGAAGGTTGGATGCACAGTAATTACCGCCACAGATGGCTTTGATGCCCTCGCAAAAATTGCGGACACACACCCTGACA
TTATTTTCGTAGATATTATGATGCCTAGGTTAGATGGCTACCAGACCTGTGCTCTAATTAAGAACAACAGCGCCTTTAAA
GCAACCCCTGTCATTATGCTTTCCAGTAAAGACGGGTTATTTGACAAAGCTAAAGGACGAATAGTCGGCTCGGATCAATA
TTTAACCAAGCCTTTTAGCAAAGACGAACTGCTAGGTACTATAAGGACGTATATACCAGCCAGCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.591

99.219

0.75
  vicR Streptococcus mutans UA159

42.735

91.406

0.391
  pilH Synechocystis sp. PCC 6803

40.517

90.625

0.367