Detailed information NTG0679131

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MY523_RS03075
• Genome accession: NZ_CP096016
• Coordinates: 690335..691204 (-)
• Length: 289 a.a.
• NCBI ID: WP_250657341.1
• Uniprot ID: -
• Organism: Alkalimarinus coralli strain SCSIO 12582
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 685335..696204

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MY523_RS03035	-	686204..686455 (-)	252	WP_250657333.1	YkgJ family cysteine cluster protein	-
MY523_RS03040	-	686733..687191 (+)	459	WP_250657334.1	PilZ domain-containing protein	-
MY523_RS03045	tsaA	687220..687933 (-)	714	WP_250657335.1	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	-
MY523_RS03050	-	687930..688649 (-)	720	WP_250657336.1	LrgB family protein	-
MY523_RS03055	-	688642..689004 (-)	363	WP_250657337.1	CidA/LrgA family protein	-
MY523_RS03060	-	689030..689470 (-)	441	WP_250657338.1	HIT family protein	-
MY523_RS03065	yacG	689522..689737 (-)	216	WP_250657339.1	DNA gyrase inhibitor YacG	-
MY523_RS03070	coaE	689712..690326 (-)	615	WP_250657340.1	dephospho-CoA kinase	-
MY523_RS03075	pilD	690335..691204 (-)	870	WP_250657341.1	A24 family peptidase	Machinery gene
MY523_RS03080	pilC	691280..692500 (-)	1221	WP_250657342.1	type II secretion system F family protein	Machinery gene
MY523_RS03085	pilB	692503..694212 (-)	1710	WP_250657343.1	type IV-A pilus assembly ATPase PilB	Machinery gene
MY523_RS03095	-	694548..695003 (+)	456	WP_275975288.1	pilin	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31993.23 Da
• Isoelectric Point: 6.8222

>NTDB_id=679131 MY523_RS03075 WP_250657341.1 690335..691204(-) (pilD) [Alkalimarinus coralli strain SCSIO 12582]
MQTFELFLNSPEYLYPAIFILGLIIGSFLNVVIYRIPKILEKEWKSQCCELLEIEGKEEPKITLSTPNSTCPKCGHEIKP
WENIPIISYLFLRGKCSSCKTHISVRYPIIELVTGLLSLAVICVLGANWAGFSALLLTWVLIALTMIDFDTQLLPDNMTL
PLVWLGLIVNAYGLFAPLETALWGAVAGYLSLWSVYHAFKLLTGKEGMGFGDFKLLAALGAWMGWQMLPVIILLSSLVGA
IVGILLIAIKGRDKNIPIPFGPYLAAAGWLALLWGHDITQAYLQFSGMK

Nucleotide

• Length: 870 bp

>NTDB_id=679131 MY523_RS03075 WP_250657341.1 690335..691204(-) (pilD) [Alkalimarinus coralli strain SCSIO 12582]
ATGCAAACTTTCGAACTGTTTTTAAACTCTCCAGAGTACTTATACCCTGCTATTTTTATTCTCGGATTAATTATCGGCAG
CTTCTTAAATGTCGTCATCTATCGTATACCCAAAATACTTGAGAAAGAGTGGAAGTCTCAGTGCTGTGAACTACTGGAGA
TTGAGGGTAAAGAAGAACCTAAAATAACATTATCGACTCCCAATTCGACCTGCCCGAAATGTGGTCATGAGATCAAGCCC
TGGGAAAACATACCGATCATTAGCTATCTATTTCTGCGTGGAAAGTGCTCCTCTTGCAAAACCCACATATCCGTTAGATA
TCCAATAATAGAGCTTGTAACAGGCCTTCTTTCACTCGCTGTTATTTGCGTGCTTGGCGCTAATTGGGCTGGCTTTTCTG
CACTGCTGCTTACATGGGTACTGATCGCATTAACGATGATCGACTTTGACACTCAACTGCTTCCTGACAATATGACATTG
CCACTGGTGTGGCTCGGACTTATTGTTAACGCTTACGGCCTGTTTGCCCCTTTAGAAACCGCTTTATGGGGCGCGGTGGC
TGGCTACCTGAGCTTATGGTCCGTTTATCATGCTTTCAAACTACTCACCGGTAAGGAAGGTATGGGCTTTGGCGACTTCA
AACTACTGGCCGCATTAGGGGCCTGGATGGGGTGGCAGATGCTGCCAGTTATCATTCTGCTCTCTTCATTAGTCGGTGCT
ATTGTTGGTATTTTACTTATTGCCATTAAAGGAAGGGATAAGAACATTCCCATACCGTTTGGCCCTTACCTTGCTGCGGC
TGGCTGGTTGGCCCTGCTTTGGGGGCATGACATCACTCAGGCATATCTCCAGTTTTCAGGTATGAAATAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-123)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	55.197	96.54	0.533
pilD	Acinetobacter baumannii D1279779	54.839	96.54	0.529
pilD	Vibrio cholerae strain A1552	54.286	96.886	0.526
pilD	Vibrio campbellii strain DS40M4	52.708	95.848	0.505
pilD	Neisseria gonorrhoeae MS11	52.239	92.734	0.484