Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   MYA84_RS01045 Genome accession   NZ_CP095872
Coordinates   223224..224642 (-) Length   472 a.a.
NCBI ID   WP_004810143.1    Uniprot ID   N9N911
Organism   Acinetobacter schindleri strain H4-3-C1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 218224..229642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYA84_RS01030 (MYA84_01025) lptG 219259..220329 (+) 1071 WP_004810149.1 LPS export ABC transporter permease LptG -
  MYA84_RS01035 (MYA84_01030) gpmI 220454..222004 (+) 1551 WP_034424062.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  MYA84_RS01040 (MYA84_01035) - 222025..223197 (+) 1173 WP_004810144.1 S41 family peptidase -
  MYA84_RS01045 (MYA84_01040) pilR 223224..224642 (-) 1419 WP_004810143.1 sigma-54-dependent transcriptional regulator Regulator
  MYA84_RS01050 (MYA84_01045) pilS 224667..226232 (-) 1566 WP_004810141.1 two-component system sensor histidine kinase NtrB Regulator
  MYA84_RS01055 (MYA84_01050) - 226282..226917 (-) 636 WP_004810139.1 response regulator -
  MYA84_RS01060 (MYA84_01055) - 227141..228196 (+) 1056 WP_026056747.1 serine hydrolase -
  MYA84_RS01065 (MYA84_01060) thrC 228261..229400 (-) 1140 WP_004810136.1 threonine synthase -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 53538.51 Da        Isoelectric Point: 6.0929

>NTDB_id=678931 MYA84_RS01045 WP_004810143.1 223224..224642(-) (pilR) [Acinetobacter schindleri strain H4-3-C1]
MEQQPLVLLVDDEEDLCTLMQMSLMRMGIRTHIAHRLEDAKKRLADHQYDACLTDLNLPDGNGLQLLEFISEHHPSLPVA
VLTAYGNMDIAIAALKAGAFDFVSKPINQKHLEQLLQKALNKPVDYQSNQQDTLEYKMLIGQSKPIQQLRTTLHKIARSQ
APVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPAELMESELFGHKKGSFTGAMQDKQGLIQSAHGGSLFLDEI
AELPLSMQVKLLRAVQEKRIRPLGSDIEIDVDFRVISASHQDLEAQVQQGKFRQDLFFRIHVMDLVLPPLRERGNDILLL
AEHFIQKICQEWQIPVKRLTEHSKEQLLTQYYPGNVRELRNIIERAITLSDEDTIDIQHLQTAPLRQSFVTSEITSNIAS
ESSNTTDTFIVPKKLPEEGLELYMEKIEKEILLNALNLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTDEEE

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=678931 MYA84_RS01045 WP_004810143.1 223224..224642(-) (pilR) [Acinetobacter schindleri strain H4-3-C1]
GTGGAACAACAACCACTGGTACTATTGGTCGATGATGAAGAAGATCTCTGTACGCTCATGCAGATGTCGCTCATGCGTAT
GGGAATTCGCACGCATATCGCCCATCGTCTGGAGGATGCTAAAAAACGCCTGGCAGATCATCAGTATGATGCCTGCCTTA
CGGACTTGAATCTGCCTGATGGTAATGGCTTGCAGCTACTGGAATTTATCAGTGAGCATCATCCTTCCCTACCGGTTGCT
GTGTTAACTGCCTATGGCAATATGGATATTGCCATTGCTGCACTCAAGGCAGGTGCCTTTGACTTTGTCAGTAAGCCGAT
CAATCAGAAACATCTGGAGCAGTTACTGCAAAAGGCACTAAATAAGCCAGTAGATTACCAATCCAATCAGCAAGATACCC
TAGAATATAAAATGCTGATTGGCCAGTCCAAGCCGATTCAGCAATTACGTACGACTTTGCATAAAATTGCCCGCTCTCAA
GCCCCGGTATTTATTACCGGTGAATCTGGTACAGGTAAAGAAGTTGTAGCAAATCTGGTTCATCGCCTCAGTAACCGGAG
TGAAGGACCCTTTATTGCCATTAACTGTGGCGCAATTCCAGCTGAACTGATGGAAAGTGAGCTGTTCGGGCACAAGAAAG
GCAGCTTTACTGGCGCCATGCAGGACAAACAGGGCCTGATCCAGTCTGCACATGGCGGCAGTTTATTTCTGGATGAAATT
GCAGAACTTCCACTCAGTATGCAGGTCAAACTGCTACGTGCAGTACAGGAAAAACGGATTCGCCCTTTAGGTTCAGATAT
TGAAATTGATGTGGATTTTCGCGTCATCAGCGCCAGTCATCAGGACCTGGAAGCACAGGTACAGCAAGGTAAATTTCGTC
AGGATTTATTCTTCCGCATTCATGTGATGGATCTAGTGTTGCCACCATTACGTGAGCGTGGTAATGACATTCTGCTGCTG
GCTGAACACTTTATTCAGAAGATCTGTCAGGAATGGCAAATCCCTGTGAAACGCCTGACTGAACATAGCAAAGAGCAGTT
ACTGACTCAATACTATCCAGGAAATGTCCGGGAATTGCGTAATATCATCGAGCGAGCTATTACCCTCAGCGATGAAGACA
CAATTGATATCCAGCATTTGCAAACTGCACCTTTACGCCAGAGTTTTGTGACCTCCGAAATCACATCGAATATAGCATCC
GAATCGAGTAACACTACTGACACTTTTATTGTACCGAAAAAACTGCCTGAAGAAGGTCTTGAACTGTATATGGAGAAAAT
CGAGAAAGAAATTTTGCTAAATGCATTGAATCTGACTCACTGGAACCGTACGCTTGCCGCAAAAAAGTTGGGCATGTCTT
TCCGCTCGCTGCGTTATCGTCTAAAGAAATTTGGGCTCGATACCGATGAAGAAGAATGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(139-305)

Response regulator receiver domain (Response_reg)

(7-116)

Bacterial regulatory protein, Fis family (HTH_8)

(424-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9N911

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

74.895

100

0.752
  pilR Pseudomonas aeruginosa PAK

48.188

99.364

0.479