Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   MYA84_RS01050 Genome accession   NZ_CP095872
Coordinates   224667..226232 (-) Length   521 a.a.
NCBI ID   WP_004810141.1    Uniprot ID   N8WJI3
Organism   Acinetobacter schindleri strain H4-3-C1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 219667..231232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYA84_RS01035 (MYA84_01030) gpmI 220454..222004 (+) 1551 WP_034424062.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  MYA84_RS01040 (MYA84_01035) - 222025..223197 (+) 1173 WP_004810144.1 S41 family peptidase -
  MYA84_RS01045 (MYA84_01040) pilR 223224..224642 (-) 1419 WP_004810143.1 sigma-54-dependent transcriptional regulator Regulator
  MYA84_RS01050 (MYA84_01045) pilS 224667..226232 (-) 1566 WP_004810141.1 two-component system sensor histidine kinase NtrB Regulator
  MYA84_RS01055 (MYA84_01050) - 226282..226917 (-) 636 WP_004810139.1 response regulator -
  MYA84_RS01060 (MYA84_01055) - 227141..228196 (+) 1056 WP_026056747.1 serine hydrolase -
  MYA84_RS01065 (MYA84_01060) thrC 228261..229400 (-) 1140 WP_004810136.1 threonine synthase -
  MYA84_RS01070 (MYA84_01065) - 229457..230761 (-) 1305 WP_071319761.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59302.62 Da        Isoelectric Point: 6.2925

>NTDB_id=678932 MYA84_RS01050 WP_004810141.1 224667..226232(-) (pilS) [Acinetobacter schindleri strain H4-3-C1]
MSQRSSYSELNQYLLGTWYAAYRLIISTGLLLIFVLTYPEHTSDLEYPKLYHYVLSSFIAIALIQLFVLKYFKKFVQQQL
TGIFIVDVCALSLLTLATNGTNLQLSMLFVITIFAASILLNAQKALVITLIAVISVIYQHFITSLFTLSSVGNIGNSAIL
AFMFFVVYGIGQIAVRRFQILENVNFSQSMELYRLQNINRYILEQIETGYLVLDENCHVVLSNPAACHLLGIQQMYAHDT
FPLYQSQPDLFELIRFEDLENGERFQFESQQSRFNIHVQVQKLIVPHQTLMLLVLQDAQKLNQQVQQLKLAALGQLSASI
AHEIRNPLAAIVQANDLLPGCEQDQQQVLHGMISKQATRINRIIEDTLNMVKNKETHPVSIQLNEFIPQCIHEDLADIAD
QIKLNIDMRLDIQFDEAQLRQVLVNLLRNAVRHNDPAVGYVELKVHPYEHKVWIDVRDFGQGVAPADQSLLFKPFFSTSI
NGTGLGLYLSHSFCEANQAQLNYIQQEQGACFRISCQRITV

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=678932 MYA84_RS01050 WP_004810141.1 224667..226232(-) (pilS) [Acinetobacter schindleri strain H4-3-C1]
ATGTCGCAGCGATCTTCTTATTCAGAGCTTAACCAATATCTGCTGGGCACCTGGTATGCGGCATACCGCCTGATCATCAG
TACTGGTTTACTGCTGATTTTCGTACTCACTTATCCTGAGCACACCAGCGATTTAGAATATCCCAAGCTGTATCATTATG
TACTGAGTAGCTTCATTGCTATCGCCTTGATCCAGCTTTTTGTTCTGAAGTATTTTAAGAAATTTGTTCAGCAACAGCTG
ACCGGTATTTTTATTGTCGATGTCTGTGCACTCAGCCTGCTGACCTTGGCCACGAATGGCACCAATCTACAGCTCAGTAT
GCTATTCGTGATTACTATCTTTGCCGCTTCCATTTTACTGAATGCACAAAAAGCGCTGGTGATTACCTTGATTGCGGTCA
TCAGTGTGATTTACCAGCATTTCATCACCAGCCTGTTTACCCTTTCCTCTGTGGGTAATATCGGCAATAGCGCCATATTG
GCTTTCATGTTTTTTGTGGTCTATGGCATCGGGCAAATTGCAGTCCGACGTTTCCAGATCTTGGAAAATGTCAATTTTTC
CCAGTCCATGGAACTTTATCGTCTACAAAATATTAACCGTTATATTCTGGAACAGATTGAGACTGGTTATCTGGTTCTCG
ATGAAAACTGTCATGTGGTGCTGAGTAATCCTGCTGCCTGCCACTTGCTTGGCATCCAGCAAATGTATGCACATGACACG
TTTCCATTGTACCAGTCACAACCAGATCTGTTTGAGTTGATCCGCTTTGAAGATCTGGAAAATGGCGAACGCTTTCAGTT
TGAATCCCAGCAAAGCCGTTTCAATATTCATGTTCAAGTACAAAAACTGATTGTACCGCATCAAACTTTAATGTTGCTGG
TGCTGCAAGATGCGCAAAAACTTAATCAACAAGTCCAGCAATTAAAACTGGCGGCACTCGGGCAACTTTCTGCCAGTATT
GCCCATGAGATTCGTAATCCGCTTGCAGCGATTGTTCAAGCTAATGATCTGTTACCTGGTTGTGAACAGGACCAACAGCA
GGTGTTGCATGGCATGATCAGCAAGCAGGCAACACGAATCAACCGGATTATTGAAGACACGCTGAATATGGTGAAGAATA
AAGAGACTCATCCAGTATCTATTCAGCTGAATGAATTTATTCCACAATGTATCCATGAGGATTTGGCTGATATTGCTGAT
CAGATTAAGCTGAATATTGATATGCGACTGGACATCCAGTTTGATGAAGCCCAGCTACGTCAAGTATTGGTCAATTTATT
GCGTAATGCCGTGCGGCATAACGATCCAGCCGTAGGCTATGTAGAATTAAAAGTTCATCCTTATGAACATAAAGTCTGGA
TTGATGTACGGGATTTTGGTCAGGGTGTGGCGCCTGCCGATCAGAGTCTGCTGTTTAAACCATTTTTCAGCACTTCAATT
AATGGTACAGGACTAGGGCTATATTTATCCCACAGTTTCTGTGAGGCCAATCAGGCCCAGCTGAATTATATACAACAAGA
ACAGGGTGCCTGCTTCCGGATTAGCTGCCAGCGCATCACTGTTTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8WJI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

57.228

96.929

0.555