Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   MYA83_RS17575 Genome accession   NZ_CP095871
Coordinates   3978459..3980684 (-) Length   741 a.a.
NCBI ID   WP_161549638.1    Uniprot ID   -
Organism   Pseudomonas palleroniana strain B-BH16-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3973459..3985684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYA83_RS17540 (MYA83_17415) murB 3973828..3974847 (-) 1020 WP_419793615.1 UDP-N-acetylmuramate dehydrogenase -
  MYA83_RS17545 (MYA83_17420) - 3974844..3975308 (-) 465 WP_060755620.1 low molecular weight protein-tyrosine-phosphatase -
  MYA83_RS17550 (MYA83_17425) kdsB 3975308..3976072 (-) 765 WP_104994118.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MYA83_RS17555 (MYA83_17430) - 3976069..3976254 (-) 186 WP_003174668.1 Trm112 family protein -
  MYA83_RS17560 (MYA83_17435) lpxK 3976279..3977289 (-) 1011 WP_161549637.1 tetraacyldisaccharide 4'-kinase -
  MYA83_RS17565 (MYA83_17440) - 3977289..3977717 (-) 429 WP_104994120.1 ExbD/TolR family protein -
  MYA83_RS17570 (MYA83_17445) exbB 3977714..3978349 (-) 636 WP_090370297.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  MYA83_RS17575 (MYA83_17450) comA 3978459..3980684 (-) 2226 WP_161549638.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MYA83_RS17580 (MYA83_17455) - 3980820..3981335 (+) 516 WP_090370293.1 DUF2062 domain-containing protein -
  MYA83_RS17585 (MYA83_17460) - 3981339..3982697 (-) 1359 WP_419793616.1 histidine kinase sensor domain-containing protein -
  MYA83_RS17590 (MYA83_17465) - 3982684..3983412 (-) 729 WP_419793617.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80301.22 Da        Isoelectric Point: 10.8447

>NTDB_id=678910 MYA83_RS17575 WP_161549638.1 3978459..3980684(-) (comA) [Pseudomonas palleroniana strain B-BH16-1]
MRTGMFALALGLLTLRWLPALPPVGGVLAMLVLALMLLPWRSYPLAFFLLGLSWACISAQWALNDRLLPALDGQTRWVEG
RVTGLPQQTSSGVRFELSDSRSRHARLPKRIRVSWHGGPAVRSGERWRLAVTLKRPSGLLNFHGFDYEAWLLAQRIGAIA
SVKDGQRLAPARDAWRDSLRQRLMSVDMQNRQGAVTALVLGDGSGLDAQDWRVLQDTGTVHLLVISGQHIGLLAGLIYGL
VAGLARYGGWPHALPWLPWACGLAFAAALGYGLLAGLGVPVQRACMMVALVLLWRLRFRHLGGWWPLLLAFNAVLVFEPL
ASLQPGFWLSFAAVAVLVLAFGARLGPWSVWQAWTRPQWLIALGLFPVLLVLGLPISLSAPVANLFAVPWVSLVVLPLAL
LGTALLGVPFVGENLLWLAGGALDGLFQGLTLLAARVPAWIPAEVPLGYWLVSLVGTVALLLPKGVPFRLLGWPMLLLAV
FPPRGPVPHGQVDVVQLDVGQGQALILRTRHHSLLYDAGPRSGMIDSGARVVLPSLKKLGVERLDMMLLSHADADHAGGA
VAVAEGLPVGRVVGGETEGLPAVLAAQPCISGETWVWDGVSFALWQWPGALDGNPRSCVLQVQANGERLLLTGDIDRAAE
RAFLDTPLATPTDWLQAPHHGSRSSSSWPFVQRLAPKSVLISRGWGNAFGHPHASVMERYRAMGSRVYDSAEQGAVRVQL
GAFKPPVVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=678910 MYA83_RS17575 WP_161549638.1 3978459..3980684(-) (comA) [Pseudomonas palleroniana strain B-BH16-1]
ATGAGAACAGGGATGTTCGCGCTCGCACTCGGTTTGCTGACGTTGCGCTGGTTGCCGGCACTGCCGCCGGTCGGCGGGGT
GTTGGCGATGCTGGTGCTGGCCTTGATGTTATTGCCGTGGCGCAGCTATCCACTGGCGTTCTTTCTGCTGGGCCTGAGCT
GGGCTTGCATCAGCGCGCAGTGGGCGCTGAATGATCGATTGCTACCCGCGCTGGACGGGCAGACCCGCTGGGTCGAGGGC
CGTGTCACCGGGCTGCCGCAGCAGACGAGCAGCGGCGTGCGCTTCGAACTCAGCGACAGTCGGTCGCGCCATGCGCGTTT
GCCCAAGCGTATCCGGGTGTCCTGGCACGGTGGACCGGCGGTACGCAGTGGCGAACGCTGGCGCCTGGCAGTGACGCTCA
AACGACCGTCCGGCCTGCTCAACTTTCACGGTTTTGACTATGAGGCGTGGCTGCTGGCCCAGCGCATTGGCGCCATTGCG
TCTGTCAAGGACGGGCAGCGCCTGGCGCCGGCTCGCGATGCGTGGCGCGATAGCCTGCGCCAGCGGCTGATGAGCGTGGA
CATGCAAAATCGCCAAGGCGCCGTGACGGCGTTGGTGCTGGGGGACGGTTCCGGCTTGGATGCGCAGGATTGGCGGGTGC
TGCAGGACACCGGGACCGTGCACCTGCTGGTGATTTCCGGCCAGCATATCGGTTTGCTGGCAGGGTTGATTTACGGCCTG
GTGGCCGGGTTGGCGCGCTATGGTGGCTGGCCCCATGCGCTGCCGTGGCTGCCATGGGCATGCGGTTTGGCGTTTGCCGC
CGCGCTGGGTTATGGCCTGCTCGCCGGGTTGGGTGTGCCGGTGCAGCGGGCCTGCATGATGGTTGCCCTGGTGTTGCTGT
GGCGCCTGCGGTTCCGGCATTTGGGCGGCTGGTGGCCGTTGTTGCTGGCATTCAATGCGGTGCTGGTATTCGAGCCCTTG
GCCAGCCTGCAGCCGGGGTTCTGGTTGTCGTTTGCCGCAGTTGCGGTGCTGGTGCTGGCCTTCGGTGCACGTCTGGGCCC
CTGGAGCGTCTGGCAGGCATGGACCCGGCCCCAATGGCTGATCGCCCTCGGGTTGTTTCCGGTGTTGCTGGTGCTCGGCC
TGCCCATCAGCCTCAGCGCGCCGGTCGCCAACCTGTTTGCCGTGCCGTGGGTCAGCCTGGTGGTGCTGCCCCTGGCGCTG
CTGGGCACTGCGCTGCTAGGGGTGCCATTTGTCGGGGAGAACCTGCTGTGGCTGGCCGGTGGGGCACTGGATGGGCTGTT
CCAGGGTTTGACGCTGTTGGCTGCGCGCGTGCCCGCCTGGATACCGGCCGAAGTACCGTTGGGATATTGGCTGGTGAGCC
TTGTGGGTACCGTGGCATTGCTGCTGCCCAAGGGCGTGCCGTTCCGGTTGCTGGGTTGGCCGATGCTTCTGTTGGCAGTG
TTTCCTCCCAGGGGCCCGGTGCCCCATGGGCAGGTTGACGTGGTGCAACTGGACGTCGGCCAGGGCCAGGCATTGATTCT
GCGCACCCGTCATCACAGCTTGCTCTACGATGCCGGCCCTCGATCCGGGATGATTGATTCAGGGGCGCGAGTGGTCTTGC
CATCGTTGAAGAAACTCGGGGTCGAGCGGTTGGACATGATGTTGCTCAGCCATGCCGACGCCGACCATGCCGGCGGTGCG
GTCGCGGTGGCCGAGGGGCTGCCCGTCGGCCGGGTAGTGGGTGGCGAGACCGAAGGGCTGCCGGCTGTTCTCGCGGCTCA
GCCCTGTATCAGTGGCGAGACATGGGTGTGGGACGGTGTGTCGTTCGCGTTATGGCAATGGCCGGGTGCGCTCGACGGTA
ACCCCAGGTCATGTGTGTTACAGGTACAGGCCAATGGTGAGCGCCTGCTGCTCACCGGCGATATCGACCGTGCGGCAGAA
CGGGCTTTTCTCGACACGCCGCTGGCGACGCCAACCGACTGGCTGCAAGCCCCCCATCATGGCAGCCGCAGTTCTTCCTC
CTGGCCCTTCGTGCAACGGTTGGCACCCAAGTCGGTGTTGATCTCCAGAGGGTGGGGCAATGCATTCGGCCACCCTCACG
CGTCGGTAATGGAACGTTATCGGGCCATGGGCAGTCGGGTCTACGACAGCGCCGAACAGGGCGCGGTGCGTGTGCAATTG
GGCGCCTTCAAGCCGCCGGTCGTTGCGCGTAGTCAACGCCGTTTCTGGCGCGAACCGTTACCTTAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-665)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.666

97.031

0.579
  comA Ralstonia pseudosolanacearum GMI1000

34.478

100

0.366