Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   MYA83_RS17570 Genome accession   NZ_CP095871
Coordinates   3977714..3978349 (-) Length   211 a.a.
NCBI ID   WP_090370297.1    Uniprot ID   A0A423EPV8
Organism   Pseudomonas palleroniana strain B-BH16-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3972714..3983349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYA83_RS17535 (MYA83_17410) - 3973097..3973768 (+) 672 WP_060755618.1 Bax inhibitor-1/YccA family protein -
  MYA83_RS17540 (MYA83_17415) murB 3973828..3974847 (-) 1020 WP_419793615.1 UDP-N-acetylmuramate dehydrogenase -
  MYA83_RS17545 (MYA83_17420) - 3974844..3975308 (-) 465 WP_060755620.1 low molecular weight protein-tyrosine-phosphatase -
  MYA83_RS17550 (MYA83_17425) kdsB 3975308..3976072 (-) 765 WP_104994118.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MYA83_RS17555 (MYA83_17430) - 3976069..3976254 (-) 186 WP_003174668.1 Trm112 family protein -
  MYA83_RS17560 (MYA83_17435) lpxK 3976279..3977289 (-) 1011 WP_161549637.1 tetraacyldisaccharide 4'-kinase -
  MYA83_RS17565 (MYA83_17440) - 3977289..3977717 (-) 429 WP_104994120.1 ExbD/TolR family protein -
  MYA83_RS17570 (MYA83_17445) exbB 3977714..3978349 (-) 636 WP_090370297.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  MYA83_RS17575 (MYA83_17450) comA 3978459..3980684 (-) 2226 WP_161549638.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MYA83_RS17580 (MYA83_17455) - 3980820..3981335 (+) 516 WP_090370293.1 DUF2062 domain-containing protein -
  MYA83_RS17585 (MYA83_17460) - 3981339..3982697 (-) 1359 WP_419793616.1 histidine kinase sensor domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22913.06 Da        Isoelectric Point: 6.8770

>NTDB_id=678909 MYA83_RS17570 WP_090370297.1 3977714..3978349(-) (exbB) [Pseudomonas palleroniana strain B-BH16-1]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=678909 MYA83_RS17570 WP_090370297.1 3977714..3978349(-) (exbB) [Pseudomonas palleroniana strain B-BH16-1]
GTGTGGGAATTGGTCAAATCCGGTGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCCGCACTCGGCATCGTTGC
TGAACGCCTGTGGACCTTGCGCGCCAGCCGCGTCACCCCCGAGCACTTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAACTCGACAAGGAAAAACTCAAGGAGCTGCGCGCCAACTCGCCCCTGGGGGAAATCCTCGCCGCCGGCCTTGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAAGCCGCTGCCCGGGTCATTCATGAGTTGGAACGCTACAT
CAACGCCCTCGGTACCATTGCCGCGATGGCGCCGTTGCTCGGCTTGCTGGGGACGGTGCTGGGTATGATCGACATCTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCCGCGGTGTTGGCCGGTGGTATTTCCAAGGCGTTGATCACCACGGCA
GCGGGCCTGATGGTCGGTATTCCATCGGTGTTTTTCCACCGCTTCCTGCAACGGCGCATCGATGAACTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGCGATGTGGACCTGGTTGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A423EPV8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858