Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   OG512_RS09275 Genome accession   NZ_CP109565
Coordinates   1869321..1869662 (+) Length   113 a.a.
NCBI ID   WP_266930255.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01378     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1864321..1874662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG512_RS09245 (OG512_09160) - 1864381..1865034 (-) 654 WP_266567746.1 response regulator transcription factor -
  OG512_RS09250 - 1865115..1866242 (+) 1128 WP_353963576.1 MFS transporter -
  OG512_RS09255 - 1866405..1867187 (-) 783 Protein_1848 hypothetical protein -
  OG512_RS09260 (OG512_09170) - 1867594..1868340 (+) 747 WP_405780313.1 winged helix-turn-helix domain-containing protein -
  OG512_RS09265 (OG512_09175) - 1868286..1868726 (+) 441 WP_355893901.1 hypothetical protein -
  OG512_RS09270 (OG512_09180) - 1868741..1869337 (+) 597 WP_405780316.1 histidine kinase dimerization/phospho-acceptor domain-containing protein -
  OG512_RS09275 (OG512_09185) micB 1869321..1869662 (+) 342 WP_266930255.1 sensor histidine kinase Regulator
  OG512_RS09280 (OG512_09190) - 1869942..1870586 (-) 645 WP_266930252.1 hypothetical protein -
  OG512_RS09285 (OG512_09195) - 1871033..1871281 (+) 249 Protein_1854 zinc ribbon domain-containing protein -
  OG512_RS09290 (OG512_09200) ltrA 1871872..1872870 (+) 999 WP_405780318.1 group II intron reverse transcriptase/maturase -
  OG512_RS09295 (OG512_09205) - 1872855..1873193 (+) 339 WP_405780320.1 group II intron maturase-specific domain-containing protein -
  OG512_RS09300 (OG512_09210) - 1873418..1874461 (-) 1044 WP_266931858.1 sodium-dependent transporter -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12090.68 Da        Isoelectric Point: 5.6288

>NTDB_id=678893 OG512_RS09275 WP_266930255.1 1869321..1869662(+) (micB) [Streptomyces sp. NBC_01378]
MDGDADALARVVRNLLDNALRYAVRRIEVSLRVCGGTAQLVITDDGPGIPEPDRHRVFDRFTRLDDARARDAGGSGLGLA
IVRDIITAHHGSIDIEDAAPGARLVVRLPADGI

Nucleotide


Download         Length: 342 bp        

>NTDB_id=678893 OG512_RS09275 WP_266930255.1 1869321..1869662(+) (micB) [Streptomyces sp. NBC_01378]
GTGGATGGCGACGCTGACGCCCTCGCGCGCGTCGTACGCAACCTGCTGGACAACGCCCTCCGGTACGCCGTCCGGCGGAT
CGAGGTGAGCCTCCGTGTCTGCGGCGGCACCGCGCAACTGGTCATCACCGATGACGGGCCCGGTATCCCCGAACCCGACC
GACACCGCGTCTTCGACCGCTTCACCCGCCTGGACGACGCACGCGCCAGAGACGCCGGCGGCAGCGGACTTGGACTGGCC
ATTGTCCGCGACATCATCACTGCCCACCACGGCAGTATTGACATCGAGGACGCTGCTCCTGGAGCCCGCCTTGTCGTTCG
CCTTCCTGCCGATGGCATCTGA

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(3-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

39.474

100

0.398
  vicK Streptococcus mutans UA159

38.532

96.46

0.372
  ciaH Streptococcus mutans UA159

36.937

98.23

0.363