Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   NALG_RS10390 Genome accession   NZ_AP017373
Coordinates   1056093..1056509 (-) Length   138 a.a.
NCBI ID   WP_096368799.1    Uniprot ID   -
Organism   Lactococcus formosensis strain 122061     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1051093..1061509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NALG_RS05125 (NALG_1059) - 1053371..1054240 (+) 870 WP_096368795.1 RluA family pseudouridine synthase -
  NALG_RS05130 (NALG_1060) - 1054327..1055172 (-) 846 WP_096368796.1 zinc ABC transporter substrate-binding protein -
  NALG_RS05135 (NALG_1061) comGF 1055407..1055847 (-) 441 WP_096368797.1 competence type IV pilus minor pilin ComGF -
  NALG_RS10385 comGE 1055828..1056061 (-) 234 WP_269457349.1 competence type IV pilus minor pilin ComGE -
  NALG_RS10390 comGD 1056093..1056509 (-) 417 WP_096368799.1 competence type IV pilus minor pilin ComGD Machinery gene
  NALG_RS05150 (NALG_1063) comYC 1056484..1056789 (-) 306 WP_096368800.1 competence type IV pilus major pilin ComGC Machinery gene
  NALG_RS05155 (NALG_1064) comGB 1056808..1057827 (-) 1020 WP_269457350.1 competence type IV pilus assembly protein ComGB Machinery gene
  NALG_RS05160 (NALG_1065) comGA 1057766..1058662 (-) 897 WP_231951199.1 competence type IV pilus ATPase ComGA Machinery gene
  NALG_RS05165 (NALG_1066) rpsU 1058896..1059072 (-) 177 WP_003134539.1 30S ribosomal protein S21 -
  NALG_RS05170 (NALG_1067) - 1059201..1060862 (-) 1662 WP_096369379.1 S-layer homology domain-containing protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15899.56 Da        Isoelectric Point: 10.3023

>NTDB_id=67834 NALG_RS10390 WP_096368799.1 1056093..1056509(-) (comGD) [Lactococcus formosensis strain 122061]
MQNVISRIKALTLLESLLVLFLCSFVLFLFSSSVKQSVRIARSEIFILQFERLYKDTQRMAGLKGQRQTLSARNGTLYSQ
EEMLKVPEEAEINDFSITFDQKSGNSSLQKITIFLPYQKKTISYQLEIGSGKYKKRIT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=67834 NALG_RS10390 WP_096368799.1 1056093..1056509(-) (comGD) [Lactococcus formosensis strain 122061]
ATGCAAAACGTAATATCCCGAATTAAAGCTTTAACTTTACTGGAGAGTTTACTCGTTCTTTTCCTATGCTCTTTTGTTCT
TTTTCTATTTTCAAGTTCGGTGAAACAAAGTGTGAGGATAGCACGTTCAGAGATTTTTATTTTACAATTTGAACGTCTGT
ATAAGGATACCCAGCGCATGGCTGGACTAAAGGGGCAGCGACAGACATTGAGTGCGCGTAATGGCACACTATATAGCCAA
GAAGAAATGTTGAAAGTCCCAGAGGAGGCTGAAATAAATGATTTCTCTATTACTTTTGATCAAAAATCAGGCAATTCGAG
CCTACAAAAAATCACAATATTTCTTCCCTATCAGAAAAAAACGATCTCTTATCAATTGGAAATTGGAAGTGGAAAATATA
AGAAGAGAATCACTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

50

100

0.5
  comYD Streptococcus mutans UA140

40.909

95.652

0.391
  comYD Streptococcus mutans UA159

40.909

95.652

0.391
  comGD/cglD Streptococcus mitis SK321

40.31

93.478

0.377
  comGD/cglD Streptococcus pneumoniae TIGR4

39.535

93.478

0.37
  comGD/cglD Streptococcus mitis NCTC 12261

38.462

94.203

0.362

Multiple sequence alignment