Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG906_RS23090 Genome accession   NZ_CP109500
Coordinates   5210118..5211191 (+) Length   357 a.a.
NCBI ID   WP_329445426.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01426     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5205118..5216191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG906_RS23070 (OG906_23060) - 5205324..5206598 (-) 1275 WP_267797920.1 FAD-dependent oxidoreductase -
  OG906_RS23075 (OG906_23065) - 5206707..5208020 (-) 1314 WP_329445422.1 deoxyguanosinetriphosphate triphosphohydrolase -
  OG906_RS23080 (OG906_23070) - 5208086..5208799 (-) 714 WP_329445424.1 sirohydrochlorin chelatase -
  OG906_RS23085 (OG906_23075) - 5209164..5209853 (+) 690 WP_267826282.1 ElyC/SanA/YdcF family protein -
  OG906_RS23090 (OG906_23080) rpoS 5210118..5211191 (+) 1074 WP_329445426.1 RNA polymerase sigma factor Regulator
  OG906_RS23095 (OG906_23085) rcrQ 5211293..5213215 (-) 1923 WP_329445427.1 ABC transporter ATP-binding protein Regulator
  OG906_RS23100 (OG906_23090) rcrP 5213212..5214945 (-) 1734 WP_329445429.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 40229.92 Da        Isoelectric Point: 5.0628

>NTDB_id=677979 OG906_RS23090 WP_329445426.1 5210118..5211191(+) (rpoS) [Streptomyces sp. NBC_01426]
MQTQTLTVNVSHPARADEPVEAEAEAVDDEPEVLELIEPVPEQRRRSADSGSGAGPSADLFRQYLREIGRIPLLTAAEEV
DLARRVEAGLFAEEKLGNTPGLDLQLTLDLDKLVVMGRMAKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRA
VEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTAEEVAVHLELTPERVL
EVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDATSPMESAAFFLLREHLEAVLSTLGERERKVVQLRYGLADGRPRTLEE
IGRIFGVTRERIRQIESKTLNKLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=677979 OG906_RS23090 WP_329445426.1 5210118..5211191(+) (rpoS) [Streptomyces sp. NBC_01426]
GTGCAGACCCAGACCCTGACCGTGAACGTGAGTCACCCCGCTCGGGCCGACGAACCCGTCGAGGCAGAGGCTGAAGCCGT
GGACGACGAGCCCGAGGTCCTGGAGCTGATCGAACCGGTGCCGGAGCAGCGCAGGCGCAGCGCGGACAGCGGGAGCGGGG
CGGGTCCCTCCGCCGACCTCTTCCGCCAGTACCTGCGCGAGATAGGCAGGATCCCGCTGCTCACCGCCGCGGAGGAAGTG
GACCTGGCACGACGCGTCGAGGCCGGGCTGTTCGCCGAGGAGAAGCTGGGCAACACCCCCGGCCTCGACCTCCAGCTCAC
CCTCGACCTGGACAAGCTCGTCGTCATGGGACGCATGGCCAAACGCCGTCTCATCGAGTCCAACCTGCGCCTCGTCGTCT
CCGTGGCCAAGCGCTACGTCGGCCGCGGGCTCACCATGCTCGACCTGGTCCAGGAGGGGAACCTCGGGCTGATCCGGGCC
GTCGAGAAGTTCGACTACGCCCGCGGCTACAAGTTCTCCACCTACGCCACCTGGTGGATCCGGCAGGCGATGTCCCGGGC
CCTCGCCGACCAGGCCCGGACCATCCGCGTCCCCGTCCACGTCGTGGAACTGATCAACCGCGTCGTGCGGGTCCAGCGCC
GCATGCTCCAGGAACGCGGGTACGAGCCCACCGCCGAAGAGGTCGCCGTCCACCTCGAACTGACCCCCGAGCGGGTCCTG
GAGGTGCTCCGCCTCGCACAGGAGCCGGTCTCCCTGCACGCCCCGGTCGGCGAGGAGGACGACGTCGCCCTCGGCGACCT
CATCGAGGACGGGGACGCCACCTCGCCCATGGAGTCGGCGGCCTTCTTCCTGCTCCGCGAGCACCTGGAAGCCGTGCTCT
CCACCCTCGGCGAGCGCGAACGCAAGGTCGTCCAACTGCGCTACGGCCTGGCGGACGGGCGGCCGCGCACCCTGGAGGAG
ATCGGCCGGATCTTCGGCGTGACCCGCGAGCGGATCCGCCAGATCGAGTCCAAGACCCTCAACAAGCTGCGCGACCACGC
CTTCGCCGACCAGCTCCGCGGCTACCTGGACTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(59-92)

Sigma-70 region 2 (Sigma70_r2)

(124-193)

Sigma-70 region 3 (Sigma70_r3)

(203-279)

Sigma-70, region 4 (Sigma70_r4)

(292-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

42.378

91.877

0.389