Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG906_RS23095 Genome accession   NZ_CP109500
Coordinates   5211293..5213215 (-) Length   640 a.a.
NCBI ID   WP_329445427.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01426     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5206293..5218215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG906_RS23075 (OG906_23065) - 5206707..5208020 (-) 1314 WP_329445422.1 deoxyguanosinetriphosphate triphosphohydrolase -
  OG906_RS23080 (OG906_23070) - 5208086..5208799 (-) 714 WP_329445424.1 sirohydrochlorin chelatase -
  OG906_RS23085 (OG906_23075) - 5209164..5209853 (+) 690 WP_267826282.1 ElyC/SanA/YdcF family protein -
  OG906_RS23090 (OG906_23080) rpoS 5210118..5211191 (+) 1074 WP_329445426.1 RNA polymerase sigma factor Regulator
  OG906_RS23095 (OG906_23085) rcrQ 5211293..5213215 (-) 1923 WP_329445427.1 ABC transporter ATP-binding protein Regulator
  OG906_RS23100 (OG906_23090) rcrP 5213212..5214945 (-) 1734 WP_329445429.1 ABC transporter ATP-binding protein Regulator
  OG906_RS23105 (OG906_23095) - 5215118..5216566 (-) 1449 WP_329445431.1 FGGY family carbohydrate kinase -
  OG906_RS23110 (OG906_23100) - 5216652..5216957 (-) 306 WP_329445433.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 68910.47 Da        Isoelectric Point: 5.2866

>NTDB_id=677980 OG906_RS23095 WP_329445427.1 5211293..5213215(-) (rcrQ) [Streptomyces sp. NBC_01426]
MSGPGGRMMMGPAQRSMDFKGSGKRLLGQLAQDRVKLWGMVVAVIGSVAFTVVGPKILGHATDLVFAGIVGRQMPAGITK
QQALDDLRARGQGGMADMLSGTAFTPGQGIDFGAVGVVAIWALVVFTLAGLLMLVATRLSNHVMNGTVYRMREELQAKLS
RLPLSYFDQQKRGEVLSRATNDIDNIGQTLQQTMGQLLNSLLTIVGVLAMMFWISPLLALVALVTVPVSIFVAAKIGKKS
QPQFVAQWKTTGTLNAHIEEMYSGHNLVKVFGRQKESAAVFAAENEELYKASFKAQLVSGIMQPVMFFISNVNYVLIAVV
GGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVYELLDAEEQEADAEVPERPESLRGQVTLDKV
AFRYEPDKPLIENLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGEIALDGLDIAKMTREELRSGIGMVLQDTWL
FGGTIAENIAYGASREVTRAEIEEAARAAHADRFIRTLPDGYDTVLDDEGAGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMESGSIVEQGTHEELLAADGAYARLYAAQFAQAVAEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=677980 OG906_RS23095 WP_329445427.1 5211293..5213215(-) (rcrQ) [Streptomyces sp. NBC_01426]
GTGAGCGGGCCCGGAGGACGAATGATGATGGGGCCGGCCCAGCGGTCCATGGACTTCAAGGGGTCCGGCAAGCGGCTGCT
GGGGCAGCTCGCGCAGGACCGGGTCAAGCTGTGGGGCATGGTCGTCGCCGTCATCGGCAGCGTCGCGTTCACGGTGGTCG
GCCCGAAGATCCTGGGTCATGCCACCGACCTGGTGTTCGCGGGGATCGTCGGCCGGCAGATGCCGGCCGGGATCACGAAG
CAGCAGGCGCTGGACGACCTGCGCGCCAGGGGCCAGGGCGGCATGGCGGACATGCTGTCCGGGACGGCCTTCACCCCGGG
CCAGGGCATCGACTTCGGCGCCGTCGGGGTCGTGGCGATCTGGGCGCTGGTGGTCTTCACCCTCGCCGGTCTGCTGATGC
TGGTCGCGACGCGGCTGTCGAACCACGTGATGAACGGCACCGTGTACCGGATGCGCGAGGAGCTCCAGGCGAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACCAGCAGAAGCGCGGCGAGGTGCTGAGCCGGGCGACGAACGACATCGACAACATCGG
GCAGACCCTCCAGCAGACGATGGGGCAGTTGCTGAACTCGCTGCTGACGATCGTCGGCGTGCTGGCGATGATGTTCTGGA
TATCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACCGTGCCGGTCTCGATCTTCGTCGCGGCGAAGATCGGCAAGAAGTCG
CAGCCGCAGTTCGTTGCGCAGTGGAAGACCACGGGCACGCTCAACGCGCACATCGAGGAGATGTACTCGGGGCACAACCT
GGTCAAGGTCTTCGGGCGGCAGAAGGAGTCCGCGGCGGTCTTCGCCGCGGAGAACGAGGAGCTGTACAAGGCTTCCTTCA
AGGCCCAGTTGGTCAGCGGCATCATGCAGCCGGTGATGTTCTTCATCTCGAACGTCAACTACGTGCTGATCGCGGTCGTC
GGCGGTCTGCGGGTGGCCTCGGGCACCCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGCCAGTTCTCGAT
GCCGCTGACGCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCCGGTGTGGCCTCGGCGGAGCGGGTGTACGAGCTGCTGG
ACGCCGAGGAGCAGGAGGCGGACGCGGAGGTCCCGGAGCGTCCGGAGTCGCTGCGCGGCCAGGTCACCCTGGACAAGGTC
GCCTTCCGTTACGAGCCGGACAAGCCGCTGATCGAGAACCTCTCGCTCACGGTCGAACCCGGGCACACGGTCGCGATCGT
CGGCCCGACGGGCGCCGGCAAGACCACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTCACGGGCGGCGAGATCGCCC
TGGACGGCCTGGACATCGCGAAGATGACCCGCGAGGAGCTGCGGAGCGGGATCGGCATGGTGCTCCAGGACACCTGGTTG
TTCGGCGGCACCATCGCGGAGAACATCGCCTACGGTGCTTCGCGCGAGGTGACCCGCGCGGAGATCGAGGAGGCCGCGCG
GGCGGCGCACGCGGACCGTTTCATCCGCACCCTGCCGGACGGCTACGACACGGTGCTGGACGACGAGGGCGCGGGGGTCA
GCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTCGACGAGGCGACC
AGTTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGTCTCGCGCACGGCCGTACGTCCTTCGTCAT
CGCGCACCGGCTGTCCACGATCCGCGACGCGGACGTGATCCTGGTGATGGAGAGCGGGTCGATCGTGGAACAGGGCACCC
ACGAGGAGCTGTTGGCGGCGGACGGCGCCTACGCGCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTGGCCGAGGTCGAC
TGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(55-349)

ABC transporter (ABC_tran)

(412-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.453

96.563

0.391