Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG906_RS23100 Genome accession   NZ_CP109500
Coordinates   5213212..5214945 (-) Length   577 a.a.
NCBI ID   WP_329445429.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01426     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5208212..5219945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG906_RS23085 (OG906_23075) - 5209164..5209853 (+) 690 WP_267826282.1 ElyC/SanA/YdcF family protein -
  OG906_RS23090 (OG906_23080) rpoS 5210118..5211191 (+) 1074 WP_329445426.1 RNA polymerase sigma factor Regulator
  OG906_RS23095 (OG906_23085) rcrQ 5211293..5213215 (-) 1923 WP_329445427.1 ABC transporter ATP-binding protein Regulator
  OG906_RS23100 (OG906_23090) rcrP 5213212..5214945 (-) 1734 WP_329445429.1 ABC transporter ATP-binding protein Regulator
  OG906_RS23105 (OG906_23095) - 5215118..5216566 (-) 1449 WP_329445431.1 FGGY family carbohydrate kinase -
  OG906_RS23110 (OG906_23100) - 5216652..5216957 (-) 306 WP_329445433.1 YtxH domain-containing protein -
  OG906_RS23130 (OG906_23120) - 5217636..5218616 (-) 981 WP_329445435.1 CinY protein -
  OG906_RS23135 (OG906_23125) - 5218920..5219873 (+) 954 WP_329440639.1 IS481 family transposase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62583.68 Da        Isoelectric Point: 5.8413

>NTDB_id=677981 OG906_RS23100 WP_329445429.1 5213212..5214945(-) (rcrP) [Streptomyces sp. NBC_01426]
MLIRLLRTHLGPYRKPIALLVLLQLLQTSASLYLPTLNADIIDNGVVNGDTGYILRFGALMLGVSLVQLVCNIGAVYHGA
RTAAALGRDVRAAVFDRVQSFSARELGQFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIAMALSLDVKLSGV
LLAVVPILGLAVGAIVFRTRPLFRKMQTRLDIVNRVLREQITGNRVIRAFVRDAYEKERFREANAELTGVSLASGKLLAL
MFPVVIVVVNISSVAVIWFGAMRVDSGGMEIGQLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTESSVVP
PTDPVRELRRHGQLELRGADFRYPGAEASVLRGVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGEVLVDGEDVR
RLDPELLARTVGMVPQKPYLFSGTVASNLRYGRPDATDEELWQALEVAQAKEFVSALEGGLEAPVAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALSRETEDATVVIVAQRVSTIRDADRIIVLDEGRVVGEGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=677981 OG906_RS23100 WP_329445429.1 5213212..5214945(-) (rcrP) [Streptomyces sp. NBC_01426]
GTGCTCATACGACTTCTGCGGACCCATCTGGGTCCGTACCGGAAACCCATCGCCCTGCTGGTGCTGCTGCAACTGCTGCA
GACCAGTGCGAGCCTCTACCTGCCCACGCTCAACGCCGACATCATCGACAACGGTGTCGTCAACGGTGACACCGGTTACA
TCCTGCGCTTCGGCGCGTTGATGCTCGGTGTCTCGCTCGTCCAGCTCGTCTGCAACATCGGGGCCGTCTACCACGGCGCC
CGCACCGCGGCGGCGCTCGGCCGGGACGTCCGGGCCGCCGTCTTCGACCGCGTGCAGAGCTTCTCCGCGCGGGAGCTCGG
CCAGTTCGGCGCCCCGTCCCTGATCACCCGTACGACGAACGACGTCCAGCAGGTCCAGATGCTGGCGCTGATGACCTTCA
CGCTGATGGTCTCGGCGCCGATCATGTGCGTCGGCGGCATCGCGATGGCCCTGTCGCTCGACGTGAAGCTGTCCGGCGTG
CTGCTCGCGGTCGTCCCGATCCTCGGCCTGGCGGTCGGCGCGATCGTCTTCAGGACGCGGCCGCTGTTCCGGAAGATGCA
GACCCGCCTGGACATCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCGTCCGCGACG
CGTACGAGAAGGAGCGCTTCCGGGAGGCGAACGCCGAGCTCACCGGGGTGTCGCTGGCCTCGGGGAAGCTGCTCGCGCTG
ATGTTCCCCGTCGTCATCGTCGTCGTGAACATCTCCAGCGTCGCCGTCATCTGGTTCGGCGCCATGCGCGTGGACAGCGG
TGGCATGGAGATCGGCCAGTTGACGGCCTTCCTCGCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGACACCGAGTCCAGCGTGGTCCCG
CCCACCGACCCGGTGCGCGAGCTGCGGCGGCACGGGCAGTTGGAACTGCGCGGCGCCGACTTCCGCTACCCCGGCGCCGA
GGCCTCGGTGTTGCGGGGCGTCGACCTGGTGGCCCGTCCCGGCGAGACGACGGCGGTGATCGGTTCCACGGGCAGCGGCA
AGTCCACGCTGCTGGGGCTGGTCCCCCGGCTGTTCGACGCGACCGGCGGCGAGGTGCTGGTCGACGGGGAGGACGTGCGC
CGGCTGGATCCGGAGCTGCTGGCCAGGACGGTGGGCATGGTGCCCCAGAAGCCGTACCTGTTCTCCGGCACCGTGGCCTC
CAACCTGCGCTACGGGCGCCCGGACGCCACGGACGAGGAACTGTGGCAGGCGCTGGAGGTGGCCCAGGCCAAGGAGTTCG
TGTCCGCGCTGGAGGGAGGCCTCGAAGCGCCCGTCGCCCAGGGCGGCACCAATGTCTCCGGCGGTCAGCGGCAGCGGCTG
GCGATCGCCCGCACGCTGGTGCAGCGCCCGGAGATCTACCTGTTCGACGACTCCTTCTCGGCGCTGGACTACGCGACGGA
CGCGGCGCTGCGCGCGGCGCTGTCCCGCGAGACGGAGGACGCGACCGTGGTCATCGTCGCCCAGCGGGTGTCCACGATCC
GTGACGCCGACCGGATCATCGTCCTCGACGAGGGCCGGGTGGTGGGCGAGGGACGCCATCACGAGTTGATGGCCGGCAAT
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCGGCGTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.863

100

0.402