Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MXM90_RS09585 Genome accession   NZ_CP095737
Coordinates   1920225..1920776 (-) Length   183 a.a.
NCBI ID   WP_058225894.1    Uniprot ID   -
Organism   Lactococcus lactis strain JNU 534     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1915225..1925776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MXM90_RS09525 (MXM90_09525) - 1915381..1915533 (-) 153 WP_014570806.1 hypothetical protein -
  MXM90_RS09530 (MXM90_09530) - 1915565..1916020 (-) 456 WP_237024111.1 hypothetical protein -
  MXM90_RS09535 (MXM90_09535) dut 1916025..1916444 (-) 420 WP_096816517.1 dUTP diphosphatase -
  MXM90_RS09540 (MXM90_09540) - 1916441..1916971 (-) 531 WP_058225995.1 DUF1642 domain-containing protein -
  MXM90_RS09545 (MXM90_09545) - 1916964..1917170 (-) 207 WP_010905356.1 DUF1125 domain-containing protein -
  MXM90_RS09550 (MXM90_09550) - 1917167..1917340 (-) 174 WP_021037754.1 DUF1497 domain-containing protein -
  MXM90_RS09555 (MXM90_09555) - 1917452..1917691 (-) 240 WP_014570744.1 DUF1031 family protein -
  MXM90_RS09560 (MXM90_09560) - 1917684..1917878 (-) 195 WP_010905693.1 hypothetical protein -
  MXM90_RS09565 (MXM90_09565) - 1917881..1918270 (-) 390 WP_081196274.1 RusA family crossover junction endodeoxyribonuclease -
  MXM90_RS09570 (MXM90_09570) - 1918260..1918424 (-) 165 WP_039115263.1 hypothetical protein -
  MXM90_RS09575 (MXM90_09575) - 1918433..1919323 (-) 891 WP_021165556.1 ATP-binding protein -
  MXM90_RS09580 (MXM90_09580) - 1919333..1920091 (-) 759 WP_058225575.1 conserved phage C-terminal domain-containing protein -
  MXM90_RS09585 (MXM90_09585) ssb 1920225..1920776 (-) 552 WP_058225894.1 single-stranded DNA-binding protein Machinery gene
  MXM90_RS09590 (MXM90_09590) - 1920790..1921281 (-) 492 WP_050499054.1 ERF family protein -
  MXM90_RS09595 (MXM90_09595) - 1921290..1921679 (-) 390 WP_058221562.1 hypothetical protein -
  MXM90_RS09600 (MXM90_09600) - 1921681..1922013 (-) 333 WP_032398920.1 helix-turn-helix domain-containing protein -
  MXM90_RS09605 (MXM90_09605) - 1922010..1922246 (-) 237 WP_050499055.1 helix-turn-helix transcriptional regulator -
  MXM90_RS09610 (MXM90_09610) - 1922346..1922582 (-) 237 WP_032398921.1 DUF1408 domain-containing protein -
  MXM90_RS09615 (MXM90_09615) - 1922685..1923035 (+) 351 WP_032398922.1 hypothetical protein -
  MXM90_RS09620 (MXM90_09620) - 1923187..1923420 (-) 234 WP_011834776.1 hypothetical protein -
  MXM90_RS09625 (MXM90_09625) - 1923514..1923783 (-) 270 WP_011835841.1 hypothetical protein -
  MXM90_RS09630 (MXM90_09630) - 1923797..1924549 (-) 753 WP_032398923.1 phage antirepressor KilAC domain-containing protein -
  MXM90_RS09635 (MXM90_09635) - 1924561..1924809 (-) 249 WP_032398924.1 helix-turn-helix transcriptional regulator -
  MXM90_RS09640 (MXM90_09640) - 1924914..1925180 (+) 267 WP_015966961.1 hypothetical protein -
  MXM90_RS09645 (MXM90_09645) - 1925174..1925368 (-) 195 WP_058225895.1 hypothetical protein -
  MXM90_RS09650 (MXM90_09650) - 1925408..1925617 (-) 210 WP_058225896.1 hypothetical protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20971.74 Da        Isoelectric Point: 6.4657

>NTDB_id=677930 MXM90_RS09585 WP_058225894.1 1920225..1920776(-) (ssb) [Lactococcus lactis strain JNU 534]
MINNVVLVGRLTKDVELRYTPQNQATATFSLAVSRSFKNASGERETDFINCVIWRQQAENMANFTHKGSLIGITGRIQTR
NYENQQGQRVYVTEVVADSFQLLESRSQGQQQQQQGNYNQNQNNYQNQGQQNTVQQQHNQGNYQRQPQGNYQNQQQSAQQ
RAQQPDPNFGGAPMEINDEDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=677930 MXM90_RS09585 WP_058225894.1 1920225..1920776(-) (ssb) [Lactococcus lactis strain JNU 534]
ATGATAAATAACGTAGTTTTAGTCGGAAGACTAACTAAAGATGTAGAACTTAGATATACTCCACAAAATCAAGCTACAGC
AACTTTCTCGCTTGCAGTGAGTCGCTCTTTCAAAAATGCCAGTGGAGAACGTGAAACAGATTTTATTAACTGTGTTATCT
GGCGACAACAAGCTGAAAATATGGCAAATTTCACACATAAAGGAAGCTTGATTGGTATCACTGGTAGAATCCAAACTCGA
AACTATGAAAATCAACAAGGACAACGTGTTTACGTTACTGAAGTTGTTGCAGATAGTTTCCAACTTCTTGAAAGTAGAAG
CCAAGGTCAACAACAGCAACAACAAGGAAATTACAATCAAAACCAAAATAATTACCAAAATCAGGGTCAACAAAATACTG
TTCAACAGCAACATAACCAAGGTAACTACCAAAGACAACCTCAAGGTAATTATCAAAATCAACAACAATCAGCTCAACAA
AGAGCCCAACAACCTGATCCAAACTTTGGAGGTGCTCCGATGGAAATCAACGATGAAGACCTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

55.319

100

0.568
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.054

100

0.546
  ssb Glaesserella parasuis strain SC1401

34.555

100

0.361