Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MX663_RS19080 Genome accession   NZ_CP095736
Coordinates   3637929..3638618 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain N4     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3632929..3643618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MX663_RS19045 (MX663_19045) flgN 3633110..3633592 (-) 483 WP_014481048.1 flagellar protein FlgN -
  MX663_RS19050 (MX663_19050) flgM 3633608..3633874 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  MX663_RS19055 (MX663_19055) yvyF 3633955..3634374 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  MX663_RS19060 (MX663_19060) comFC 3634447..3635169 (-) 723 WP_247470847.1 comF operon protein ComFC Machinery gene
  MX663_RS19065 (MX663_19065) comFB 3635133..3635429 (-) 297 WP_015483764.1 late competence protein ComFB -
  MX663_RS19070 (MX663_19070) comFA 3635489..3636880 (-) 1392 WP_247470850.1 ATP-dependent helicase ComFA Machinery gene
  MX663_RS19075 (MX663_19075) fakBA 3636986..3637831 (-) 846 WP_076457520.1 DegV family protein -
  MX663_RS19080 (MX663_19080) degU 3637929..3638618 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MX663_RS19085 (MX663_19085) degS 3638701..3639858 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  MX663_RS19090 (MX663_19090) yvyE 3640075..3640728 (+) 654 WP_003227979.1 YigZ family protein -
  MX663_RS19095 (MX663_19095) tagV 3640728..3641903 (+) 1176 WP_247470853.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  MX663_RS19100 (MX663_19100) tagO 3641975..3643051 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=677893 MX663_RS19080 WP_003219701.1 3637929..3638618(-) (degU) [Bacillus subtilis strain N4]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=677893 MX663_RS19080 WP_003219701.1 3637929..3638618(-) (degU) [Bacillus subtilis strain N4]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATAAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1