Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   MX663_RS19070 Genome accession   NZ_CP095736
Coordinates   3635489..3636880 (-) Length   463 a.a.
NCBI ID   WP_247470850.1    Uniprot ID   -
Organism   Bacillus subtilis strain N4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3630489..3641880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MX663_RS19035 (MX663_19035) flgL 3630661..3631557 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  MX663_RS19040 (MX663_19040) flgK 3631568..3633091 (-) 1524 WP_247470844.1 flagellar hook-associated protein FlgK -
  MX663_RS19045 (MX663_19045) flgN 3633110..3633592 (-) 483 WP_014481048.1 flagellar protein FlgN -
  MX663_RS19050 (MX663_19050) flgM 3633608..3633874 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  MX663_RS19055 (MX663_19055) yvyF 3633955..3634374 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  MX663_RS19060 (MX663_19060) comFC 3634447..3635169 (-) 723 WP_247470847.1 comF operon protein ComFC Machinery gene
  MX663_RS19065 (MX663_19065) comFB 3635133..3635429 (-) 297 WP_015483764.1 late competence protein ComFB -
  MX663_RS19070 (MX663_19070) comFA 3635489..3636880 (-) 1392 WP_247470850.1 ATP-dependent helicase ComFA Machinery gene
  MX663_RS19075 (MX663_19075) fakBA 3636986..3637831 (-) 846 WP_076457520.1 DegV family protein -
  MX663_RS19080 (MX663_19080) degU 3637929..3638618 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MX663_RS19085 (MX663_19085) degS 3638701..3639858 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  MX663_RS19090 (MX663_19090) yvyE 3640075..3640728 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52650.66 Da        Isoelectric Point: 9.8572

>NTDB_id=677892 MX663_RS19070 WP_247470850.1 3635489..3636880(-) (comFA) [Bacillus subtilis strain N4]
MNVPVEKNSSFSKELQQMLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKSLNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESSIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=677892 MX663_RS19070 WP_247470850.1 3635489..3636880(-) (comFA) [Bacillus subtilis strain N4]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGATGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAACAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCAGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGTACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCGCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAATCATTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCGTCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTACTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.704

100

0.987