Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG207_RS28880 Genome accession   NZ_CP109487
Coordinates   6393958..6395010 (+) Length   350 a.a.
NCBI ID   WP_329102254.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01439     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 6388958..6400010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG207_RS28860 (OG207_28875) - 6389701..6389883 (+) 183 WP_329102246.1 hypothetical protein -
  OG207_RS28865 (OG207_28880) - 6390007..6392115 (+) 2109 WP_329102248.1 molybdopterin oxidoreductase family protein -
  OG207_RS28870 (OG207_28885) - 6392116..6393096 (-) 981 WP_329102250.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OG207_RS28875 (OG207_28890) - 6393203..6393805 (-) 603 WP_329102252.1 hypothetical protein -
  OG207_RS28880 (OG207_28895) rpoS 6393958..6395010 (+) 1053 WP_329102254.1 RNA polymerase sigma factor Regulator
  OG207_RS28885 (OG207_28900) - 6395070..6395585 (-) 516 WP_329102256.1 GNAT family N-acetyltransferase -
  OG207_RS28890 (OG207_28905) rcrQ 6395669..6397591 (-) 1923 WP_329102258.1 ABC transporter ATP-binding protein Regulator
  OG207_RS28895 (OG207_28910) rcrP 6397588..6399321 (-) 1734 WP_329102259.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 39344.96 Da        Isoelectric Point: 5.2637

>NTDB_id=677595 OG207_RS28880 WP_329102254.1 6393958..6395010(+) (rpoS) [Streptomyces sp. NBC_01439]
MQTRTLTVNVSESSEAKAVDEEPEVLELIEPVPVQRRRSSGDSGGGAGPSADLFRQYLREIGRIPLLTAAEEVDLARRVE
AGLFAEEKLGNTPDLDSQLALDLDKLVVMGRMAKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYA
RGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTAEEVAVQLELTPERVLEVLRLAQ
EPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFFLLREHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGV
TRERIRQIESKTLNKLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=677595 OG207_RS28880 WP_329102254.1 6393958..6395010(+) (rpoS) [Streptomyces sp. NBC_01439]
GTGCAGACCCGGACCCTGACCGTGAACGTGAGCGAGTCCTCGGAGGCCAAGGCCGTGGACGAAGAGCCCGAGGTACTGGA
GCTGATCGAGCCGGTGCCCGTGCAGCGCAGGCGCAGCAGCGGCGACAGCGGAGGCGGAGCGGGCCCGTCCGCCGACTTGT
TCCGGCAGTACCTCCGCGAAATAGGCAGGATTCCGCTGCTCACCGCCGCCGAGGAGGTGGACCTCGCGCGCCGCGTCGAA
GCCGGCCTGTTCGCCGAGGAGAAACTCGGCAACACCCCCGATCTCGACTCCCAGCTCGCCCTCGACCTCGACAAGCTCGT
CGTCATGGGGCGGATGGCCAAGCGCCGGCTCATCGAGTCGAACCTGCGGCTCGTCGTCTCCGTCGCCAAGCGGTACGTGG
GCCGCGGACTCACCATGCTCGACCTCGTGCAGGAGGGGAACCTCGGGCTGATCCGCGCCGTCGAGAAGTTCGACTACGCC
CGCGGGTACAAGTTCTCCACCTACGCCACCTGGTGGATCCGGCAGGCGATGTCACGGGCCCTCGCCGACCAGGCCCGGAC
CATTCGGGTGCCCGTCCACGTCGTCGAACTGATCAACCGGGTCGTCCGCGTACAGCGTCGGATGCTCCAGGAGCGCGGGT
ACGAGCCCACGGCCGAAGAGGTCGCCGTCCAGCTGGAGTTGACCCCCGAACGGGTCCTGGAGGTGCTCCGCCTCGCGCAA
GAGCCGGTCTCCCTGCACGCCCCGGTGGGCGAGGAGGACGACGTCGCGCTCGGCGACCTCATCGAGGACGGGGACGCCGC
CTCCCCCGTGGAATCGGCCGCCTTCTTCCTGCTGCGCGAGCACCTGGAAGCCGTCCTGTCGACCCTCGGCGAGCGCGAGC
GCAAGGTCGTGCAGCTGCGGTACGGCCTCGCCGACGGGCGGCCCCGTACCCTGGAGGAAATCGGGCGGATCTTCGGCGTG
ACGCGCGAGCGGATCCGCCAGATCGAGTCCAAGACCCTCAACAAACTGCGCGACCACGCCTTCGCCGACCAGCTCCGCGG
CTACCTGGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(196-272)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(52-85)

Sigma-70 region 2 (Sigma70_r2)

(117-186)

Sigma-70, region 4 (Sigma70_r4)

(285-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

44.027

83.714

0.369