Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG207_RS28890 Genome accession   NZ_CP109487
Coordinates   6395669..6397591 (-) Length   640 a.a.
NCBI ID   WP_329102258.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01439     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6390669..6402591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG207_RS28870 (OG207_28885) - 6392116..6393096 (-) 981 WP_329102250.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OG207_RS28875 (OG207_28890) - 6393203..6393805 (-) 603 WP_329102252.1 hypothetical protein -
  OG207_RS28880 (OG207_28895) rpoS 6393958..6395010 (+) 1053 WP_329102254.1 RNA polymerase sigma factor Regulator
  OG207_RS28885 (OG207_28900) - 6395070..6395585 (-) 516 WP_329102256.1 GNAT family N-acetyltransferase -
  OG207_RS28890 (OG207_28905) rcrQ 6395669..6397591 (-) 1923 WP_329102258.1 ABC transporter ATP-binding protein Regulator
  OG207_RS28895 (OG207_28910) rcrP 6397588..6399321 (-) 1734 WP_329102259.1 ABC transporter ATP-binding protein Regulator
  OG207_RS28900 (OG207_28915) - 6399464..6400912 (-) 1449 WP_329102261.1 FGGY family carbohydrate kinase -
  OG207_RS28905 (OG207_28920) - 6401010..6401312 (-) 303 WP_329102263.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 68913.45 Da        Isoelectric Point: 5.1884

>NTDB_id=677596 OG207_RS28890 WP_329102258.1 6395669..6397591(-) (rcrQ) [Streptomyces sp. NBC_01439]
MSGPGGRMMMGPAQRSMDFKGSGKRLLRQLAYDRAKIWGMVAAVVGSVGCAVVGPKILGEATDLVFAGIVGRQMPAGTTK
QQALDGLRARGQDGMADMLAGTDFTPGQGIDFGAVGVVAIWALVVFTLAGLLMLVATRLSNHVMNGTVYRMREELQAKLS
RLPLSYFDQQKRGEVLSRATNDIDNIGQTLQQTMGQLLNSLLTIVGVLVMMFWISPLLALVALVTVPLSVFVAAKIGKKS
QPQFVAQWKATGALNAHIEEMYSGHSLVKVFGRQKESAAVFAEQNEALYRASFTSQLVSGIMQPVMFFISNINYVLIAVV
GGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVYELLDAPEQEPDAVVPERPQELRGQVTFDKV
AFRYEPDKPLIENLSLTVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGEIALDGVDIAKMTREELRDGIGMVLQDTWL
FGGTIAENIAYGASREVTRAEIEEAARAAHADRFVRTLPDGYDTVLDDEGAGVSAGEKQLITIARAFLSEPVILVLDEAT
SSVDTRTEVLIQKAMARLARGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHEELLASGGAYARLYAAQFAQAVAEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=677596 OG207_RS28890 WP_329102258.1 6395669..6397591(-) (rcrQ) [Streptomyces sp. NBC_01439]
ATGAGCGGGCCCGGAGGACGGATGATGATGGGGCCGGCCCAGCGGTCCATGGACTTCAAGGGTTCGGGCAAGCGGCTGCT
GCGCCAGCTCGCGTACGACCGGGCCAAGATCTGGGGCATGGTCGCGGCCGTCGTCGGCAGCGTCGGCTGCGCGGTGGTGG
GCCCGAAGATCCTGGGCGAGGCCACCGACCTGGTGTTCGCGGGGATCGTCGGCCGCCAGATGCCGGCCGGGACCACCAAG
CAGCAGGCGCTGGACGGGCTGCGCGCCCGGGGCCAGGACGGCATGGCGGACATGCTCGCCGGTACCGACTTCACCCCGGG
GCAGGGCATCGACTTCGGCGCCGTCGGGGTCGTCGCGATCTGGGCGCTGGTGGTCTTCACCCTGGCCGGCCTGCTGATGC
TGGTCGCGACCCGGCTGTCGAACCACGTCATGAACGGCACCGTCTACCGGATGCGCGAGGAGCTCCAGGCGAAGCTGTCG
CGGCTGCCGCTGTCCTACTTCGACCAGCAGAAGCGCGGCGAGGTGCTGAGCCGGGCCACGAACGACATCGACAACATCGG
CCAGACGCTCCAGCAGACGATGGGCCAGTTGCTGAACTCGCTGCTGACCATCGTCGGCGTGCTCGTGATGATGTTCTGGA
TCTCTCCGCTGCTGGCGCTCGTCGCGCTGGTGACCGTACCGCTGTCGGTCTTCGTCGCCGCGAAGATCGGCAAGAAGTCG
CAGCCGCAGTTCGTGGCGCAGTGGAAGGCGACCGGCGCGCTCAACGCCCACATCGAGGAGATGTACTCGGGCCACAGCCT
GGTCAAGGTCTTCGGCCGGCAGAAGGAGTCCGCTGCCGTCTTCGCCGAGCAGAACGAGGCGCTCTACCGGGCCTCCTTCA
CGTCGCAGCTGGTCAGCGGCATCATGCAGCCGGTGATGTTCTTCATCTCGAACATCAACTACGTGCTGATAGCCGTCGTC
GGCGGGCTCCGGGTCGCCTCCGGCACCCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGGCAGTTCTCGAT
GCCGCTGACGCAGGTCGCCTCGATGGCGAACCTCGTGCAGTCCGGTGTCGCCTCGGCGGAGCGGGTGTACGAGCTGCTCG
ACGCGCCGGAGCAGGAGCCGGACGCGGTGGTTCCGGAGCGTCCGCAGGAGCTGCGCGGTCAGGTCACCTTCGACAAGGTG
GCCTTCCGATACGAGCCGGACAAGCCGCTGATCGAGAACCTCTCGCTCACGGTCGAGCCGGGCCAGACGGTCGCGATCGT
CGGCCCGACCGGCGCCGGCAAGACCACGCTGGTCAATCTGCTGATGCGGTTCTACGAGGTCACGGGCGGGGAGATCGCCC
TCGACGGGGTGGACATCGCGAAGATGACCCGCGAGGAACTGCGCGACGGCATCGGCATGGTGCTGCAGGACACCTGGCTG
TTCGGCGGCACCATCGCGGAGAACATCGCCTACGGCGCTTCGCGCGAGGTCACGCGCGCCGAGATCGAGGAGGCGGCGCG
GGCCGCCCACGCGGACCGGTTCGTCCGCACCCTGCCGGACGGTTACGACACCGTGCTGGACGACGAGGGCGCGGGGGTCA
GCGCGGGCGAGAAGCAGCTGATCACCATCGCCCGGGCGTTCTTGTCGGAGCCGGTGATCCTGGTGCTCGACGAGGCCACG
AGCTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGCCTCGCGCGCGGCCGCACGTCCTTCGTGAT
CGCGCACCGGCTGTCCACGATCCGCGACGCGGACGTGATCCTGGTGATGGAGAACGGATCGATCGTGGAGCAGGGCACGC
ACGAGGAGCTGTTGGCCTCGGGCGGCGCGTACGCACGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTGGCCGAGGTCGAC
TAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(55-349)

ABC transporter (ABC_tran)

(412-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.871

97.188

0.387