Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG207_RS28895 Genome accession   NZ_CP109487
Coordinates   6397588..6399321 (-) Length   577 a.a.
NCBI ID   WP_329102259.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01439     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6392588..6404321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG207_RS28875 (OG207_28890) - 6393203..6393805 (-) 603 WP_329102252.1 hypothetical protein -
  OG207_RS28880 (OG207_28895) rpoS 6393958..6395010 (+) 1053 WP_329102254.1 RNA polymerase sigma factor Regulator
  OG207_RS28885 (OG207_28900) - 6395070..6395585 (-) 516 WP_329102256.1 GNAT family N-acetyltransferase -
  OG207_RS28890 (OG207_28905) rcrQ 6395669..6397591 (-) 1923 WP_329102258.1 ABC transporter ATP-binding protein Regulator
  OG207_RS28895 (OG207_28910) rcrP 6397588..6399321 (-) 1734 WP_329102259.1 ABC transporter ATP-binding protein Regulator
  OG207_RS28900 (OG207_28915) - 6399464..6400912 (-) 1449 WP_329102261.1 FGGY family carbohydrate kinase -
  OG207_RS28905 (OG207_28920) - 6401010..6401312 (-) 303 WP_329102263.1 YtxH domain-containing protein -
  OG207_RS28925 (OG207_28940) - 6402340..6403134 (+) 795 WP_329102265.1 5-deoxy-glucuronate isomerase -
  OG207_RS28930 (OG207_28945) - 6403250..6403537 (-) 288 WP_329102267.1 hypothetical protein -
  OG207_RS28935 (OG207_28950) - 6403570..6403911 (-) 342 WP_329102270.1 transcriptional regulator -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62532.45 Da        Isoelectric Point: 4.9932

>NTDB_id=677597 OG207_RS28895 WP_329102259.1 6397588..6399321(-) (rcrP) [Streptomyces sp. NBC_01439]
MLIRLLRTHLGTYRKPIAVLVLLQLLQTSASLYLPTLNADIIDNGVVNGDTGYILRFGALMLAVSLVQLVCNVGAVYYGA
RTAAAFGRDVRAAIFDRVQSFSARELGQFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIAMALSLDVKLSGV
LLAVVPVLGISVGAIVFKTRPLFRQMQVRLDTVNRVLREQITGNRVIRAFVRDDYEKDRFREANADLTGVSLSAGKLLAY
MFPTVIVVVNISSVAVIWFGAMRVDSGGMEIGQLTAFLAYLMQIVMAVMMATFMFMMVPRAEVCGERIQEVLDTESSVVP
PEDPVRELARRGRLELRGADFRYPGAEAPVLRGVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGEVLVDGEDVR
ALDPELLAKTVGMVPQKPYLFSGTIASNLRYGRPDASDEELWQALEVAQAKEFVSALEGGLEAPVSQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETEDATVVIVAQRVSTIRDADRIIVLDEGQVVGEGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=677597 OG207_RS28895 WP_329102259.1 6397588..6399321(-) (rcrP) [Streptomyces sp. NBC_01439]
GTGCTCATACGACTTCTGCGGACCCATCTGGGTACGTACCGGAAACCCATCGCGGTGCTGGTCCTGCTGCAACTGCTGCA
GACCAGCGCCAGCCTCTACCTGCCCACGCTCAACGCCGACATCATCGACAACGGTGTCGTCAACGGTGACACCGGCTACA
TCCTGCGCTTCGGCGCGCTGATGCTCGCTGTCTCCCTCGTCCAGCTCGTCTGCAACGTCGGGGCCGTCTACTACGGCGCC
CGCACGGCCGCGGCCTTCGGCCGGGACGTCCGCGCCGCGATCTTCGACCGCGTGCAGAGCTTCTCGGCGCGGGAGCTGGG
CCAGTTCGGCGCCCCGTCGCTGATCACCCGTACGACGAATGACGTCCAACAGGTCCAGATGCTGGTGCTCATGACCTTCA
CCCTGATGGTCTCGGCCCCGATCATGTGCGTCGGCGGCATCGCCATGGCGCTCTCGCTCGACGTGAAGCTGTCGGGCGTA
CTGCTCGCCGTCGTCCCGGTGCTCGGGATCTCGGTCGGCGCGATCGTCTTCAAGACGCGGCCGCTGTTCCGCCAGATGCA
GGTGCGCCTGGACACCGTGAACCGGGTCCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCGTCCGCGACG
ACTACGAGAAGGACCGCTTCCGCGAGGCCAACGCCGACCTGACCGGCGTCTCGCTGTCCGCCGGCAAGCTCCTCGCGTAC
ATGTTCCCCACGGTCATCGTGGTCGTGAACATCTCCAGCGTCGCCGTCATCTGGTTCGGTGCGATGCGCGTCGACAGCGG
CGGCATGGAGATCGGCCAGCTGACGGCCTTCCTGGCCTACCTGATGCAGATCGTCATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGGGGAACGCATCCAGGAGGTCCTGGACACCGAGTCCAGCGTGGTCCCG
CCCGAGGACCCGGTGCGCGAACTCGCCCGCCGCGGCCGCCTGGAGCTGCGCGGCGCCGACTTCCGCTACCCGGGCGCCGA
GGCTCCGGTCCTGCGCGGCGTGGACCTGGTGGCCCGACCCGGCGAGACCACGGCGGTCATCGGCTCCACCGGAAGCGGCA
AGTCCACCCTGCTGGGCCTGGTCCCGCGCCTGTTCGACGCGACCGGCGGCGAGGTCCTCGTCGACGGGGAGGACGTCCGC
GCGCTCGACCCGGAGCTGCTGGCCAAGACGGTCGGCATGGTGCCGCAGAAGCCGTACCTGTTCTCCGGGACCATCGCCTC
CAACCTGCGCTACGGGCGCCCGGACGCGAGTGACGAAGAGCTCTGGCAGGCGCTGGAGGTGGCCCAGGCCAAGGAGTTCG
TCTCCGCGCTGGAGGGCGGCCTGGAGGCCCCCGTCAGTCAGGGCGGAACCAATGTCTCCGGCGGCCAGCGCCAGCGTCTG
GCCATCGCCCGCACGCTCGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCCCTGGACTACGCGACGGA
CGCGGCGCTGCGCGCGGCGCTCGCCCGCGAGACCGAGGACGCGACCGTGGTCATCGTCGCCCAGCGGGTCTCCACGATCC
GCGACGCCGACCGGATCATCGTCCTGGACGAGGGCCAGGTCGTGGGCGAGGGGCGCCACCACGAGCTGATGGCCGGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.331

98.96

0.409