Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MW696_RS12585 Genome accession   NZ_CP095476
Coordinates   2424312..2425001 (-) Length   229 a.a.
NCBI ID   WP_046130088.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain MGMM1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2419312..2430001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW696_RS12550 (MW696_12555) - 2419468..2419944 (-) 477 WP_048354938.1 flagellar protein FlgN -
  MW696_RS12555 (MW696_12560) flgM 2419966..2420232 (-) 267 WP_048405767.1 flagellar biosynthesis anti-sigma factor FlgM -
  MW696_RS12560 (MW696_12565) - 2420312..2420731 (-) 420 WP_048353652.1 TIGR03826 family flagellar region protein -
  MW696_RS12565 (MW696_12570) comFC 2420789..2421523 (-) 735 WP_048353651.1 amidophosphoribosyltransferase Machinery gene
  MW696_RS12570 (MW696_12575) - 2421480..2421764 (-) 285 WP_048353650.1 competence protein ComFB -
  MW696_RS12575 (MW696_12580) comFA 2421820..2423214 (-) 1395 WP_232517731.1 DEAD/DEAH box helicase Machinery gene
  MW696_RS12580 (MW696_12585) - 2423348..2424190 (-) 843 WP_048405768.1 DegV family protein -
  MW696_RS12585 (MW696_12590) degU 2424312..2425001 (-) 690 WP_046130088.1 two-component system response regulator DegU Regulator
  MW696_RS12590 (MW696_12595) degS 2425084..2426241 (-) 1158 WP_247069620.1 histidine kinase Regulator
  MW696_RS12595 (MW696_12600) - 2426462..2427100 (+) 639 WP_247069621.1 YigZ family protein -
  MW696_RS12600 (MW696_12605) - 2427115..2428206 (+) 1092 WP_048353646.1 LCP family protein -
  MW696_RS12605 (MW696_12610) - 2428383..2429447 (-) 1065 WP_048353645.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25860.54 Da        Isoelectric Point: 5.9436

>NTDB_id=677166 MW696_RS12585 WP_046130088.1 2424312..2425001(-) (degU) [Bacillus glycinifermentans strain MGMM1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDMYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=677166 MW696_RS12585 WP_046130088.1 2424312..2425001(-) (degU) [Bacillus glycinifermentans strain MGMM1]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAGTTATTCCGTGAAGGAGTAAAACGGATTTTGGATTTCGAACC
TACCTTTGAGGTAGTGGCTGAAGGAGACGACGGTGACGAAGCGGCTCGCATTGTCGAGCACTATCATCCGGATGTAGTCA
TCATGGATATCAATATGCCGAATGTAAACGGAGTTGAAGCGACAAAACAACTTGTCGATATGTATCCGGAATCAAAGGTC
ATAATTTTATCGATCCATGATGATGAAAACTATGTGACACATGCGTTAAAAACCGGAGCACGCGGCTATCTGCTTAAAGA
GATGGATGCCGATACACTGATTGAAGCCGTTAAGGTAGTGGCTGAAGGCGGTTCTTACCTTCATCCTAAGGTTACGCACA
ATCTTGTTAACGAATTTCGCCGTCTGGCAACAAGCGGCGTGTCATCTCACGCTCAGCACGAAGTGTATCCAGAAATCCGC
AGACCTTTGCACATTCTCACAAGGCGGGAATGCGAAGTATTGCAAATGCTCGCGGACGGAAAAAGCAACCGCGGCATAGG
AGAATCTTTATTTATCAGTGAAAAAACGGTTAAAAACCACGTCAGCAACATCCTGCAGAAAATGAACGTAAACGACAGAA
CACAAGCAGTCGTTGTGGCCATCAAAAATGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.253

100

0.983