Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   MW696_RS12575 Genome accession   NZ_CP095476
Coordinates   2421820..2423214 (-) Length   464 a.a.
NCBI ID   WP_232517731.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain MGMM1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2416820..2428214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW696_RS12540 (MW696_12545) flgL 2417000..2417917 (-) 918 WP_048405775.1 flagellar hook-associated protein FlgL -
  MW696_RS12545 (MW696_12550) flgK 2417927..2419450 (-) 1524 WP_247069617.1 flagellar hook-associated protein FlgK -
  MW696_RS12550 (MW696_12555) - 2419468..2419944 (-) 477 WP_048354938.1 flagellar protein FlgN -
  MW696_RS12555 (MW696_12560) flgM 2419966..2420232 (-) 267 WP_048405767.1 flagellar biosynthesis anti-sigma factor FlgM -
  MW696_RS12560 (MW696_12565) - 2420312..2420731 (-) 420 WP_048353652.1 TIGR03826 family flagellar region protein -
  MW696_RS12565 (MW696_12570) comFC 2420789..2421523 (-) 735 WP_048353651.1 amidophosphoribosyltransferase Machinery gene
  MW696_RS12570 (MW696_12575) - 2421480..2421764 (-) 285 WP_048353650.1 competence protein ComFB -
  MW696_RS12575 (MW696_12580) comFA 2421820..2423214 (-) 1395 WP_232517731.1 DEAD/DEAH box helicase Machinery gene
  MW696_RS12580 (MW696_12585) - 2423348..2424190 (-) 843 WP_048405768.1 DegV family protein -
  MW696_RS12585 (MW696_12590) degU 2424312..2425001 (-) 690 WP_046130088.1 two-component system response regulator DegU Regulator
  MW696_RS12590 (MW696_12595) degS 2425084..2426241 (-) 1158 WP_247069620.1 histidine kinase Regulator
  MW696_RS12595 (MW696_12600) - 2426462..2427100 (+) 639 WP_247069621.1 YigZ family protein -
  MW696_RS12600 (MW696_12605) - 2427115..2428206 (+) 1092 WP_048353646.1 LCP family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52602.19 Da        Isoelectric Point: 9.9542

>NTDB_id=677165 MW696_RS12575 WP_232517731.1 2421820..2423214(-) (comFA) [Bacillus glycinifermentans strain MGMM1]
MAGKQPPSEYSRNLQSLLESRHLLKSELPFPDDVIEWHIQKGLIKAEKPIEETTKGFVCKRCGQDQQVLFARYPCYACNK
QCVYCRSCVMMGRVSECTPLLTWKGGDQSKWPPVQMVWEGILSAGQEKAARSIIEAIRKKEELLIWAVCGSGKTEILFQG
IEFALNHGLRVCIATPRTDVVLELAPRVKKAFEGAEIAALYGGSPDRGMLSPLMISTTHQLFRYKEAFDVMIVDEVDAFP
YSYDQTLQYAVEKAGKRQSARIYLTATPSREMKKRAESGRLKAAHIPARYHRKPLPEPSFTWCGNWKKSLKRHIIPLAVK
RWLFKHKEQKQPVFLFVPSIPALKSVVPLLKKEHFQSEGVYADDPDRNEKVKRFRDGTLDILVTTTILERGVTVKKAQVG
VLGAESAVFDESALVQISGRAGRHPQYTTGDVRFFHFGKTANMVAARRHIRRMNKMALLENLVD

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=677165 MW696_RS12575 WP_232517731.1 2421820..2423214(-) (comFA) [Bacillus glycinifermentans strain MGMM1]
ATCGCCGGAAAGCAGCCCCCATCTGAATACTCCCGCAATTTACAGTCATTGCTTGAATCCCGCCACCTTCTCAAAAGTGA
ACTTCCCTTTCCCGATGATGTAATTGAATGGCATATCCAAAAAGGCTTGATCAAAGCTGAAAAACCGATTGAAGAAACGA
CAAAAGGCTTTGTCTGCAAACGGTGCGGCCAGGATCAGCAGGTGCTTTTCGCCCGGTATCCTTGTTATGCATGCAATAAA
CAATGTGTCTACTGCCGTTCGTGCGTAATGATGGGCAGAGTAAGCGAATGTACGCCACTATTGACTTGGAAAGGCGGTGA
TCAGTCTAAATGGCCGCCTGTCCAGATGGTTTGGGAGGGAATTCTTTCGGCGGGCCAGGAGAAAGCGGCAAGATCGATTA
TTGAAGCGATTCGAAAAAAAGAAGAGCTTTTAATTTGGGCGGTTTGCGGGTCAGGCAAAACGGAAATTTTGTTTCAAGGA
ATCGAATTTGCTTTAAACCATGGCTTGAGAGTATGCATAGCCACTCCGAGAACGGATGTGGTGCTGGAGCTTGCCCCGCG
CGTAAAGAAAGCTTTTGAAGGCGCAGAAATCGCCGCTTTATACGGGGGAAGTCCCGATAGAGGGATGCTTTCCCCTCTTA
TGATATCGACCACCCATCAGCTTTTCCGCTATAAAGAAGCGTTCGATGTGATGATCGTTGATGAGGTTGATGCGTTCCCG
TACAGTTATGATCAAACATTGCAGTACGCCGTAGAAAAAGCAGGGAAGCGGCAAAGCGCCCGCATTTATTTAACAGCCAC
TCCTTCCCGGGAAATGAAAAAACGAGCTGAAAGCGGGCGGCTCAAGGCCGCTCACATCCCGGCCCGGTATCATCGGAAGC
CATTGCCTGAACCGTCATTTACGTGGTGCGGAAACTGGAAAAAGAGTCTCAAACGCCACATCATTCCTTTAGCCGTCAAA
AGATGGCTTTTCAAACATAAAGAACAAAAACAGCCGGTCTTTTTATTTGTTCCGTCTATTCCGGCTCTCAAATCTGTGGT
TCCCCTGTTAAAGAAGGAACACTTTCAATCCGAAGGCGTTTATGCCGATGATCCGGATAGAAATGAAAAGGTAAAGCGGT
TTAGGGATGGGACGCTTGATATCCTCGTCACGACGACCATTTTGGAAAGAGGCGTAACGGTCAAAAAAGCACAAGTCGGA
GTGCTGGGCGCTGAATCGGCCGTTTTTGACGAAAGCGCCCTGGTCCAAATATCGGGTAGAGCCGGGAGGCACCCGCAATA
TACAACAGGTGACGTCCGTTTTTTTCACTTCGGCAAGACGGCGAACATGGTCGCAGCCCGCCGTCATATTCGCCGAATGA
ATAAAATGGCTTTACTGGAAAATTTGGTTGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(123-270)

Helicase conserved C-terminal domain (Helicase_C)

(322-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.222

96.983

0.603