Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   MWH18_RS01790 Genome accession   NZ_CP095407
Coordinates   373649..374131 (+) Length   160 a.a.
NCBI ID   WP_002116770.1    Uniprot ID   A0A009RUX0
Organism   Acinetobacter pittii strain TCM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 368649..379131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWH18_RS01780 (MWH18_01780) pilX 368963..369772 (+) 810 WP_005067126.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  MWH18_RS01785 (MWH18_01785) pilY1 369784..373638 (+) 3855 WP_032057269.1 PilC/PilY family type IV pilus protein Machinery gene
  MWH18_RS01790 (MWH18_01790) pilY2 373649..374131 (+) 483 WP_002116770.1 type IV pilin protein Machinery gene
  MWH18_RS01795 (MWH18_01795) pilE 374128..374553 (+) 426 WP_002117055.1 type IV pilin protein Machinery gene
  MWH18_RS01800 (MWH18_01800) rpsP 374701..374952 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  MWH18_RS01805 (MWH18_01805) rimM 374972..375520 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  MWH18_RS01810 (MWH18_01810) trmD 375563..376318 (+) 756 WP_002116964.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  MWH18_RS01815 (MWH18_01815) rplS 376538..376906 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  MWH18_RS01820 (MWH18_01820) lip 376958..377899 (-) 942 WP_080777126.1 triacylglycerol lipase -
  MWH18_RS01825 (MWH18_01825) - 378015..379046 (-) 1032 WP_032057272.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17520.76 Da        Isoelectric Point: 8.4721

>NTDB_id=676751 MWH18_RS01790 WP_002116770.1 373649..374131(+) (pilY2) [Acinetobacter pittii strain TCM]
MNKYYIQRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGAVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=676751 MWH18_RS01790 WP_002116770.1 373649..374131(+) (pilY2) [Acinetobacter pittii strain TCM]
ATGAATAAATACTATATCCAACGGTTTAATCAGGGTGTTACCTTGATTGAGCTCATGGTTGTCATCGTGATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGCAGAGCGACTGCCTCTGCTGCTAAAGGTGAAATTCTAA
AATTGGCAGAACAGTTGGAACGGCATAAATCCAAGAACTTTACCTATAGAGGATTTACTACGACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAGAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAATTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGCCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAGCAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009RUX0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.75

100

0.938
  comE Acinetobacter baylyi ADP1

40.678

100

0.45