Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   MRK30_RS16700 Genome accession   NZ_CP095357
Coordinates   3372907..3373311 (-) Length   134 a.a.
NCBI ID   WP_032057521.1    Uniprot ID   -
Organism   Acinetobacter pittii strain 19MO01SH04     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3367907..3378311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRK30_RS16670 (MRK30_16705) - 3367991..3368260 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  MRK30_RS16675 (MRK30_16710) rapZ 3368257..3369108 (-) 852 WP_002117179.1 RNase adapter RapZ -
  MRK30_RS16680 (MRK30_16715) panC 3369132..3369980 (-) 849 WP_032057513.1 pantoate--beta-alanine ligase -
  MRK30_RS16685 (MRK30_16720) panB 3369984..3370793 (-) 810 WP_032057515.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  MRK30_RS16690 (MRK30_16725) folK 3370839..3371321 (-) 483 WP_032057517.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  MRK30_RS16695 (MRK30_16730) pcnB 3371318..3372781 (-) 1464 WP_032057519.1 polynucleotide adenylyltransferase PcnB -
  MRK30_RS16700 (MRK30_16735) comEA 3372907..3373311 (-) 405 WP_032057521.1 ComEA family DNA-binding protein Machinery gene
  MRK30_RS16705 (MRK30_16740) mazG 3373280..3374086 (-) 807 WP_032057523.1 nucleoside triphosphate pyrophosphohydrolase -
  MRK30_RS16710 (MRK30_16745) - 3374199..3374972 (+) 774 WP_014208394.1 SDR family oxidoreductase -
  MRK30_RS16715 (MRK30_16750) relA 3375019..3377325 (-) 2307 WP_002117181.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15518.74 Da        Isoelectric Point: 10.5869

>NTDB_id=676491 MRK30_RS16700 WP_032057521.1 3372907..3373311(-) (comEA) [Acinetobacter pittii strain 19MO01SH04]
MQLSMNLWKNKHNIFIVLFWSLISSTFIQAQSFDQNFKEWKTKQQRYDQKLSMQHSSHSNSPKSSVMTDSSGQIHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=676491 MRK30_RS16700 WP_032057521.1 3372907..3373311(-) (comEA) [Acinetobacter pittii strain 19MO01SH04]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAGCACAATATTTTCATTGTTTTATTTTGGAGCCTGATTTCTTCAACCTT
TATTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGACTAAACAGCAGAGGTATGATCAGAAGTTGAGCATGC
AGCATTCCTCTCATTCTAACAGTCCAAAAAGTTCAGTTATGACTGATTCGTCAGGGCAAATTCACTTGAATCAAGCCAAT
ATTGATGAGCTCCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCAATTGTGGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGCATTGGTCCCGCCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

68.613

100

0.701
  comEA Acinetobacter baumannii D1279779

68.613

100

0.701
  comEA Acinetobacter baylyi ADP1

42.742

92.537

0.396