Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG552_RS11125 Genome accession   NZ_CP109446
Coordinates   2454766..2456682 (+) Length   638 a.a.
NCBI ID   WP_329140721.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01476     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2449766..2461682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG552_RS11110 (OG552_11125) - 2450726..2451019 (+) 294 WP_329131766.1 YtxH domain-containing protein -
  OG552_RS11115 (OG552_11130) - 2451186..2452631 (+) 1446 WP_329131767.1 FGGY family carbohydrate kinase -
  OG552_RS11120 (OG552_11135) rcrP 2452985..2454721 (+) 1737 WP_329131769.1 ABC transporter ATP-binding protein Regulator
  OG552_RS11125 (OG552_11140) rcrQ 2454766..2456682 (+) 1917 WP_329140721.1 ABC transporter ATP-binding protein Regulator
  OG552_RS11130 (OG552_11145) - 2456739..2457923 (-) 1185 WP_329140723.1 RNA polymerase sigma factor -
  OG552_RS11135 (OG552_11150) dnaG 2458265..2460184 (-) 1920 WP_329131771.1 DNA primase -

Sequence

Protein


Download         Length: 638 a.a.        Molecular weight: 69164.79 Da        Isoelectric Point: 6.7876

>NTDB_id=676486 OG552_RS11125 WP_329140721.1 2454766..2456682(+) (rcrQ) [Streptomyces sp. NBC_01476]
MPGPGRFMSGGPVERSMDFQGSLKRLLRMMRPDRFLLYTMLVLGIVSVGLSVTGPRILGHATDLIFAGVIGRQIRGGSKE
QALDSLRAHGQGKIADVVSGIDFTPGQGMDFDAIGKVLLLALGVYVVAAVLSVFQMRTATKVINRAVYRMRKDVEAKLSR
LPLSYFDQQPRGEVLSRATNDIDNIGQTMQQTMGQLVNSLLTIIGVLAMMFWISWLLALVALVTVPVTLLVATRIGKRAQ
PQFVQQWKTTGALNAHIEEMYTGHSLVKVFGRAKESAEIFERENSALYRTGFRAQFISGMIQPMMMFIGNINYVLVAVIG
GLRVASGALSIGDVQAFVQYSRQFSQPLTQVASMANLIQSGVASAERVFELLDAGEQSPEPTALARPAGLRGRVALEKVA
FRYDPDRPLIDDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGTDVSAISREELRSSIGMVLQDTWLF
GGTIAENIGYGREGASREDIEAAARAAHADRFIRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDEATSS
VDTRTEVLIQRAMAKLSHGRTSFVIAHRLSTIRDADVILVMESGSIVEQGTHEELLAAQGAYARLYAAQFAQAVVEVD

Nucleotide


Download         Length: 1917 bp        

>NTDB_id=676486 OG552_RS11125 WP_329140721.1 2454766..2456682(+) (rcrQ) [Streptomyces sp. NBC_01476]
ATGCCGGGGCCCGGGCGGTTCATGAGCGGCGGGCCGGTCGAGCGGTCGATGGACTTCCAGGGGTCGCTGAAGCGGCTGTT
GCGGATGATGCGGCCGGACCGGTTCCTCCTGTACACGATGCTGGTGCTGGGCATCGTCAGCGTCGGCCTGTCGGTGACCG
GACCGCGGATCCTCGGGCACGCCACCGACCTGATCTTCGCCGGGGTGATCGGCCGGCAGATCAGGGGCGGCTCCAAGGAG
CAGGCCCTGGACTCGCTGCGAGCCCACGGCCAGGGCAAGATCGCCGACGTGGTGTCGGGCATCGACTTCACCCCCGGCCA
GGGCATGGACTTCGACGCCATCGGAAAGGTGCTGCTGCTCGCGCTCGGCGTCTACGTGGTCGCCGCGGTGCTCAGCGTCT
TCCAGATGCGTACCGCCACCAAGGTCATCAACCGCGCTGTCTACCGGATGCGCAAGGACGTCGAGGCGAAGCTCTCCCGG
CTGCCGCTGTCGTACTTCGACCAGCAACCGCGCGGCGAGGTGCTCAGCCGGGCCACCAACGACATCGACAACATCGGCCA
GACGATGCAGCAGACCATGGGCCAGCTGGTCAACTCGCTGCTCACCATCATCGGCGTGCTGGCGATGATGTTCTGGATCT
CCTGGCTGCTCGCGCTGGTCGCGCTGGTGACCGTCCCGGTGACGCTGCTGGTGGCGACGAGGATCGGCAAGCGGGCCCAG
CCGCAGTTCGTCCAGCAGTGGAAGACCACCGGGGCGCTCAACGCGCACATCGAGGAGATGTACACCGGTCACTCGCTGGT
GAAGGTCTTCGGCCGGGCGAAGGAGTCCGCGGAGATCTTCGAACGGGAGAACAGCGCGCTGTACCGGACAGGTTTCCGCG
CCCAGTTCATCTCCGGCATGATCCAGCCGATGATGATGTTCATCGGCAACATCAACTACGTGCTGGTCGCGGTGATCGGC
GGCCTGCGGGTCGCCTCGGGCGCGCTGTCCATCGGTGACGTGCAGGCGTTCGTGCAGTACTCGCGGCAGTTCAGCCAGCC
GCTGACGCAGGTCGCGAGCATGGCGAACCTGATCCAGTCCGGGGTCGCCTCGGCCGAGCGGGTCTTCGAACTCCTCGACG
CCGGGGAGCAGTCGCCCGAGCCCACCGCGCTGGCCCGCCCGGCCGGGCTGCGGGGACGGGTGGCGCTGGAGAAGGTCGCC
TTCCGCTACGACCCGGACCGGCCGCTCATCGACGACCTGTCGCTGACGGTCGAGCCCGGCCACACGGTGGCGATCGTCGG
CCCGACCGGCGCCGGCAAGACCACGCTGGTCAATCTGCTGATGCGGTTCTACGAGGTCTCCGGCGGCCGGATCACCCTGG
ACGGCACCGACGTCTCGGCGATCTCCCGGGAGGAGCTGCGGTCCTCGATAGGGATGGTGCTCCAGGACACCTGGCTCTTC
GGCGGCACCATCGCCGAGAACATCGGGTACGGCCGGGAGGGCGCGAGCCGCGAGGACATCGAGGCGGCGGCGCGGGCGGC
GCACGCGGACCGCTTCATCCGCACCCTGCCGGACGGGTACGACACGGTCATCGACGACGAGGGCAGCGGAGTCAGCGCGG
GCGAGAAGCAGCTCATCACCATCGCCCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTGGACGAGGCGACCAGCTCC
GTCGACACCCGCACCGAGGTGCTGATCCAGCGGGCGATGGCCAAGCTCAGCCACGGCCGGACCAGTTTCGTCATCGCGCA
CCGGCTGTCCACCATCCGCGACGCCGACGTCATCCTGGTGATGGAGTCCGGGTCGATCGTGGAGCAGGGCACGCACGAGG
AACTGCTGGCCGCGCAGGGGGCGTACGCGCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTGGTGGAGGTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(411-559)

ABC transporter transmembrane region (ABC_membrane)

(56-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40

96.395

0.386