Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   MRK30_RS01720 Genome accession   NZ_CP095357
Coordinates   357711..358193 (+) Length   160 a.a.
NCBI ID   WP_002116770.1    Uniprot ID   A0A009RUX0
Organism   Acinetobacter pittii strain 19MO01SH04     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 352711..363193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRK30_RS01710 (MRK30_01715) pilX 353025..353834 (+) 810 WP_005067126.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  MRK30_RS01715 (MRK30_01720) pilY1 353846..357700 (+) 3855 WP_032057269.1 PilC/PilY family type IV pilus protein Machinery gene
  MRK30_RS01720 (MRK30_01725) pilY2 357711..358193 (+) 483 WP_002116770.1 type IV pilin protein Machinery gene
  MRK30_RS01725 (MRK30_01730) pilE 358190..358615 (+) 426 WP_002117055.1 type IV pilin protein Machinery gene
  MRK30_RS01730 (MRK30_01735) rpsP 358763..359014 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  MRK30_RS01735 (MRK30_01740) rimM 359034..359582 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  MRK30_RS01740 (MRK30_01745) trmD 359625..360380 (+) 756 WP_002116964.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  MRK30_RS01745 (MRK30_01750) rplS 360600..360968 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  MRK30_RS01750 (MRK30_01755) lip 361020..361961 (-) 942 WP_080777126.1 triacylglycerol lipase -
  MRK30_RS01755 (MRK30_01760) - 362077..363108 (-) 1032 WP_032057272.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17520.76 Da        Isoelectric Point: 8.4721

>NTDB_id=676472 MRK30_RS01720 WP_002116770.1 357711..358193(+) (pilY2) [Acinetobacter pittii strain 19MO01SH04]
MNKYYIQRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGAVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=676472 MRK30_RS01720 WP_002116770.1 357711..358193(+) (pilY2) [Acinetobacter pittii strain 19MO01SH04]
ATGAATAAATACTATATCCAACGGTTTAATCAGGGTGTTACCTTGATTGAGCTCATGGTTGTCATCGTGATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGCAGAGCGACTGCCTCTGCTGCTAAAGGTGAAATTCTAA
AATTGGCAGAACAGTTGGAACGGCATAAATCCAAGAACTTTACCTATAGAGGATTTACTACGACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAGAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAATTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGCCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAGCAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009RUX0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.75

100

0.938
  comE Acinetobacter baylyi ADP1

40.678

100

0.45