Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   MRO11_RS12450 Genome accession   NZ_CP095336
Coordinates   2728618..2729250 (+) Length   210 a.a.
NCBI ID   WP_004394497.1    Uniprot ID   A0A7X4XR47
Organism   Vibrio metschnikovii strain 19GA03SH07     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2723618..2734250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRO11_RS12425 (MRO11_12380) - 2723694..2725613 (+) 1920 WP_154170014.1 ABC transporter ATP-binding protein -
  MRO11_RS12430 (MRO11_12385) - 2725613..2726083 (+) 471 WP_332396371.1 TIGR02444 family protein -
  MRO11_RS12435 (MRO11_12390) - 2726109..2727077 (+) 969 WP_332396372.1 hydrolase -
  MRO11_RS12440 (MRO11_12395) - 2727148..2727357 (+) 210 WP_004394499.1 YheU family protein -
  MRO11_RS12445 (MRO11_12400) - 2727453..2728326 (+) 874 Protein_2382 phosphoribulokinase -
  MRO11_RS12450 (MRO11_12405) crp 2728618..2729250 (+) 633 WP_004394497.1 cAMP-activated global transcriptional regulator CRP Regulator
  MRO11_RS12455 (MRO11_12410) - 2729349..2730143 (-) 795 WP_004394496.1 DUF1338 domain-containing protein -
  MRO11_RS12460 (MRO11_12415) astD 2730235..2731695 (-) 1461 WP_332396373.1 succinylglutamate-semialdehyde dehydrogenase -
  MRO11_RS12465 (MRO11_12420) astA 2731717..2732736 (-) 1020 WP_040903963.1 arginine N-succinyltransferase -
  MRO11_RS12470 (MRO11_12425) - 2732834..2734045 (-) 1212 WP_004394493.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23651.45 Da        Isoelectric Point: 7.8388

>NTDB_id=676443 MRO11_RS12450 WP_004394497.1 2728618..2729250(+) (crp) [Vibrio metschnikovii strain 19GA03SH07]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=676443 MRO11_RS12450 WP_004394497.1 2728618..2729250(+) (crp) [Vibrio metschnikovii strain 19GA03SH07]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACACTAGAGTGGTTCCTTTCACATTGTCATATCCATAAGTACCCTTCAAA
AAGCACGCTGATCCATGCGGGCGAAAAAGCGGAAACCTTGTACTACATTGTTAAAGGTTCTGTTGCGGTACTGATTAAAG
ACGAAGAAGGTAAAGAGATGATTCTTTCTTACCTTAACCAAGGTGATTTCATCGGCGAGCTTGGTCTGTTCGAAGAAGAT
CAAGAACGTACCGCTTGGGTTCGAGCTAAATCCCCTTGTGAAGTCGCGGAAATTTCTTTTAAGAAGTTCCGTCAATTGAT
TCAAGTTAACCCCGATATCCTGATGCGTCTATCAGGGCAAATGGCTCGTCGCCTACAAGTAACCAGCCAAAAAGTCGGTG
ATTTGGCGTTCCTTGATGTGACTGGTCGTATTGCACAAACTCTACTAAACCTAGCAAAACAACCCGATGCAATGACTCAC
CCTGATGGGATGCAAATCAAAATCACTCGTCAAGAAATTGGTCAAATCGTTGGTTGCTCTCGTGAAACCGTTGGCCGGAT
TCTGAAAATGCTTGAAGAGCAAAATCTGATATCAGCACACGGTAAAACCATCGTGGTCTACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X4XR47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.571

100

0.986
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467