Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   MRO11_RS11560 Genome accession   NZ_CP095336
Coordinates   2553277..2554143 (+) Length   288 a.a.
NCBI ID   WP_158138884.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 19GA03SH07     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2548277..2559143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRO11_RS11540 (MRO11_11495) nadC 2548507..2549397 (+) 891 WP_186463683.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MRO11_RS11545 (MRO11_11500) - 2549680..2550129 (+) 450 WP_154170158.1 pilin -
  MRO11_RS11550 (MRO11_11505) pilB 2550168..2551856 (+) 1689 WP_161438931.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MRO11_RS11555 (MRO11_11510) pilC 2551875..2553101 (+) 1227 WP_154170154.1 type II secretion system F family protein Machinery gene
  MRO11_RS11560 (MRO11_11515) pilD 2553277..2554143 (+) 867 WP_158138884.1 A24 family peptidase Machinery gene
  MRO11_RS11565 (MRO11_11520) coaE 2554149..2554757 (+) 609 WP_186463684.1 dephospho-CoA kinase -
  MRO11_RS11570 (MRO11_11525) zapD 2554789..2555529 (+) 741 WP_004394266.1 cell division protein ZapD -
  MRO11_RS11575 (MRO11_11530) yacG 2555571..2555768 (+) 198 WP_040903818.1 DNA gyrase inhibitor YacG -
  MRO11_RS11580 (MRO11_11535) parC 2555865..2558138 (-) 2274 WP_158138887.1 DNA topoisomerase IV subunit A -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31889.16 Da        Isoelectric Point: 7.8853

>NTDB_id=676442 MRO11_RS11560 WP_158138884.1 2553277..2554143(+) (pilD) [Vibrio metschnikovii strain 19GA03SH07]
MDIFYYIPWLFPALATLLGLIIGSFLNVVIYRLPTMMQREWRQECADAFPDYGITPPDGKLTLSTPRSTCPKCHTPLRIR
DNIPLISWLCLQGKCAHCSAPISARYPAIELLTAVSSLIIALHFGFSPYSVALLLFTYVLIAATFIDLDSMLLPDQLTLP
LLWAGISLALLNISPLSLNDAVIGAIAGYLCLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQLLPLIVLLSSLVGL
VFGLIQLRLQKQGINKAFPFGPYLAIAGWLAMLWGDKLIAWYLHSLVG

Nucleotide


Download         Length: 867 bp        

>NTDB_id=676442 MRO11_RS11560 WP_158138884.1 2553277..2554143(+) (pilD) [Vibrio metschnikovii strain 19GA03SH07]
ATGGACATTTTTTACTATATACCTTGGCTATTTCCCGCCTTAGCAACGCTATTGGGGTTAATTATTGGTAGTTTTCTGAA
TGTGGTGATTTACCGCTTACCAACGATGATGCAACGAGAATGGCGTCAAGAATGTGCCGATGCTTTTCCTGACTATGGCA
TCACACCCCCTGATGGCAAGCTCACGCTCAGTACACCTCGTTCAACTTGCCCTAAATGTCATACGCCTTTGCGCATAAGA
GATAATATTCCACTTATCAGTTGGCTCTGCTTGCAAGGCAAATGCGCGCACTGTTCAGCACCGATCAGCGCTCGCTATCC
GGCGATTGAGCTATTAACTGCCGTGAGCAGTTTGATCATTGCTCTGCACTTTGGCTTTAGCCCTTATAGTGTGGCACTGC
TGCTGTTTACTTATGTGTTAATCGCCGCCACCTTCATTGATTTGGATAGTATGTTGCTGCCAGACCAATTGACTCTGCCT
TTACTGTGGGCAGGGATCAGCCTAGCACTGTTGAATATTAGCCCACTCTCACTGAATGATGCCGTGATTGGAGCGATAGC
AGGCTATCTTTGCTTATGGTCGATTTATTGGCTATTTAAGCTACTGACCGGTAAAGAAGGTATGGGCTATGGTGACTTTA
AGCTGCTTGCCGCGCTCGGAGCTTGGTTAGGTTGGCAATTATTACCGTTAATCGTATTACTCTCTTCACTGGTCGGTTTG
GTGTTTGGATTGATTCAATTGCGTTTGCAAAAACAAGGCATTAATAAAGCTTTCCCGTTTGGTCCTTACTTGGCGATTGC
TGGTTGGCTAGCGATGTTGTGGGGCGATAAACTGATCGCTTGGTATCTACATTCATTAGTAGGATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(135-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

76.736

100

0.767
  pilD Vibrio campbellii strain DS40M4

71.875

100

0.719
  pilD Acinetobacter nosocomialis M2

57.037

93.75

0.535
  pilD Acinetobacter baumannii D1279779

55.556

93.75

0.521
  pilD Neisseria gonorrhoeae MS11

45.105

99.306

0.448