Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   MRO11_RS08745 Genome accession   NZ_CP095336
Coordinates   1942550..1944793 (-) Length   747 a.a.
NCBI ID   WP_350006987.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 19GA03SH07     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1937550..1949793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRO11_RS08725 (MRO11_08695) kdsB 1938852..1939598 (-) 747 WP_186463294.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MRO11_RS08730 (MRO11_08700) - 1939598..1939777 (-) 180 WP_154167670.1 Trm112 family protein -
  MRO11_RS08735 (MRO11_08705) lpxK 1939758..1940765 (-) 1008 WP_350006988.1 tetraacyldisaccharide 4'-kinase -
  MRO11_RS08740 (MRO11_08710) msbA 1940769..1942517 (-) 1749 WP_154167664.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  MRO11_RS08745 (MRO11_08715) comEC 1942550..1944793 (-) 2244 WP_350006987.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MRO11_RS08750 (MRO11_08720) - 1944802..1945323 (+) 522 WP_040904202.1 DUF2062 domain-containing protein -
  MRO11_RS08755 (MRO11_08725) lolE 1945471..1946715 (-) 1245 WP_350006986.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  MRO11_RS08760 (MRO11_08730) lolD 1946715..1947401 (-) 687 WP_004394928.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  MRO11_RS08765 (MRO11_08735) lolC 1947394..1948602 (-) 1209 WP_217543681.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  MRO11_RS08770 (MRO11_08740) - 1948821..1949390 (+) 570 WP_040904201.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 83997.17 Da        Isoelectric Point: 9.5139

>NTDB_id=676437 MRO11_RS08745 WP_350006987.1 1942550..1944793(-) (comEC) [Vibrio metschnikovii strain 19GA03SH07]
MALLSNYWTLASFSLTILSAPFWPWMPKWPIIIGIVVVLMMSLVTRRGRGCIGITLALVLIITHGNKVTAQSNNILQFAT
DITIKGVADSFFTAHRYGFSGSFVVRSINGQSLPRFLSPTVRLNSPIALQLGDHAQFVVQVKPIYGRLNEVGFDQEAFFL
SQGWSAQATVRPNTAYQIIPSSSLRAIFFQQIEQRTRSSKVQGFILALTFGERSGITEQQWLELRNSGLIHLTAISGLHI
GMAFGFGYLLGGMCSRLLRKGLWLPFVCGGLFALGYAWLAGFTLPTQRALMMCWLNILLVMFNVRVTAIQRVLLTLAAVL
ALDPFASLSTSFWLSFLAVSFVIYQVSVIDSRWPLWKKVFAGHLLLVMLMAPVTAYFFSGVSLYSALYNLVFIPWFSFVV
VPLLFIVLCGNVLIADQVQWLWTWVEAALMPFSWSLGFAEHSWLPVNQTWQYSLLALFLVMMLRPLLTARSLIAIGLLFS
ATWLTIQPKVYWQVDMLDVGHGLAMVIERNGRYVLYDTGSSWHEGSVATSLIIPLLTRRGGLDALDGVIISHSDNDHAGG
LADIQSRLKPAWIRASYRNEHFSPCIQGEFWQWQELTFEVVWPPRLVDRADNPHSCVVRMVDKQYGHSVLLTGDVTAIGE
WLLSRDALLDSDVLVVPHHGSQTSSTQAFIEKVNPQLAIASLAKGHRWRLPHPDVLARYQSLDIPWLDTGEVGQITLRYQ
GSQRQLFTLRGGRITPWYRQMLRKEVE

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=676437 MRO11_RS08745 WP_350006987.1 1942550..1944793(-) (comEC) [Vibrio metschnikovii strain 19GA03SH07]
ATGGCTCTCTTATCGAATTACTGGACGTTGGCTTCGTTCTCGTTAACGATACTCTCTGCCCCATTTTGGCCTTGGATGCC
CAAATGGCCTATTATCATTGGCATTGTTGTTGTGTTGATGATGAGTCTCGTGACACGCCGAGGCAGGGGATGCATCGGAA
TTACACTGGCCTTAGTGTTGATAATAACACACGGAAATAAAGTAACCGCACAGTCCAATAATATCTTACAATTTGCGACA
GATATTACCATAAAAGGTGTCGCTGACAGCTTTTTTACTGCTCATCGCTACGGTTTTAGTGGTTCTTTTGTAGTGAGATC
AATCAATGGTCAATCTTTACCCCGATTTTTGTCTCCCACGGTACGTTTAAATTCCCCGATCGCCTTACAATTGGGTGATC
ATGCTCAATTTGTGGTACAGGTGAAGCCGATTTATGGGCGATTGAATGAAGTCGGGTTTGATCAAGAAGCCTTTTTTCTG
AGTCAAGGCTGGAGCGCACAAGCGACCGTTCGTCCCAATACAGCTTATCAAATCATCCCCAGTTCAAGTTTGCGGGCGAT
ATTTTTTCAACAGATTGAGCAACGAACGCGATCCAGCAAGGTTCAAGGCTTTATTTTAGCCCTCACTTTTGGTGAGCGTA
GCGGGATTACCGAACAGCAGTGGTTGGAATTACGCAATAGCGGTTTAATCCATCTCACGGCGATCTCAGGGTTGCACATT
GGTATGGCATTTGGTTTTGGCTATTTGTTGGGGGGGATGTGTAGCCGCCTTTTGAGAAAGGGCTTATGGCTACCTTTTGT
TTGCGGTGGATTGTTTGCACTTGGTTATGCTTGGCTGGCAGGTTTTACGCTACCGACTCAGCGAGCATTGATGATGTGTT
GGTTAAATATTCTATTAGTCATGTTTAATGTTCGAGTGACCGCTATTCAACGGGTATTATTAACGTTAGCTGCGGTATTG
GCTTTGGACCCTTTTGCTTCATTAAGCACAAGTTTCTGGTTATCTTTTTTAGCGGTCAGTTTTGTTATTTACCAAGTCTC
CGTCATCGATAGCCGATGGCCGCTATGGAAGAAAGTGTTTGCTGGTCATCTATTATTAGTGATGTTAATGGCTCCGGTGA
CGGCTTACTTCTTCTCTGGCGTTAGCCTTTATTCCGCGCTTTATAATCTCGTGTTTATTCCTTGGTTCAGCTTTGTGGTT
GTTCCCTTACTGTTTATTGTCTTGTGTGGCAATGTGTTGATCGCCGATCAAGTCCAGTGGCTTTGGACTTGGGTTGAGGC
GGCTTTAATGCCGTTTAGCTGGTCGTTAGGTTTTGCAGAACATAGCTGGTTACCGGTTAACCAAACGTGGCAATATAGTT
TGTTGGCCTTATTTTTAGTGATGATGTTACGGCCACTTTTGACCGCGCGATCTCTTATTGCGATTGGGTTACTTTTTAGC
GCGACTTGGTTAACGATACAACCGAAGGTCTACTGGCAAGTGGATATGTTGGATGTTGGACATGGCTTGGCGATGGTTAT
TGAGCGTAACGGACGTTATGTTTTATACGATACAGGGAGTAGTTGGCATGAAGGCAGCGTGGCGACATCACTGATTATTC
CATTATTAACTCGACGCGGAGGACTAGATGCCCTTGATGGCGTGATCATTAGCCATAGTGATAATGATCACGCGGGAGGA
TTAGCCGATATTCAATCGCGGCTAAAACCAGCTTGGATTCGCGCTAGTTACCGTAATGAACATTTCTCTCCGTGTATTCA
AGGTGAATTCTGGCAATGGCAAGAATTGACGTTTGAAGTCGTGTGGCCACCTCGTTTGGTTGATAGAGCGGATAACCCTC
ATTCTTGTGTAGTGCGTATGGTTGATAAGCAATATGGGCATAGTGTGTTGTTGACCGGTGATGTGACGGCGATTGGTGAG
TGGTTACTCAGTCGTGACGCGTTATTAGACAGTGATGTGTTAGTGGTTCCTCATCATGGAAGTCAAACGTCGTCTACACA
AGCGTTTATAGAAAAGGTCAATCCACAGTTGGCGATTGCTTCATTGGCGAAAGGTCATCGATGGCGATTACCTCACCCAG
ACGTTCTCGCACGTTATCAATCTTTAGACATTCCGTGGCTTGATACGGGAGAGGTCGGACAAATAACACTCCGTTACCAA
GGATCTCAACGTCAGCTTTTCACCTTACGCGGTGGGCGAATCACGCCTTGGTATAGGCAGATGCTACGTAAAGAGGTAGA
ATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(25-173)

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-678)

Competence protein (Competence)

(208-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

52.005

100

0.521
  comEC Vibrio campbellii strain DS40M4

41.247

100

0.416
  comEC Vibrio parahaemolyticus RIMD 2210633

41.005

100

0.415