Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   MRO13_RS04835 Genome accession   NZ_CP095311
Coordinates   1026283..1028526 (+) Length   747 a.a.
NCBI ID   WP_350940272.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 20CO01TI02     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1021283..1033526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRO13_RS04810 (MRO13_04805) - 1021686..1022255 (-) 570 WP_350940268.1 PilZ domain-containing protein -
  MRO13_RS04815 (MRO13_04810) lolC 1022474..1023682 (+) 1209 WP_170905088.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  MRO13_RS04820 (MRO13_04815) lolD 1023675..1024361 (+) 687 WP_154167560.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  MRO13_RS04825 (MRO13_04820) lolE 1024361..1025605 (+) 1245 WP_170905087.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  MRO13_RS04830 (MRO13_04825) - 1025753..1026274 (-) 522 WP_350940270.1 DUF2062 domain-containing protein -
  MRO13_RS04835 (MRO13_04830) comEC 1026283..1028526 (+) 2244 WP_350940272.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MRO13_RS04840 (MRO13_04835) msbA 1028559..1030307 (+) 1749 WP_154167664.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  MRO13_RS04845 (MRO13_04840) lpxK 1030311..1031318 (+) 1008 WP_170906201.1 tetraacyldisaccharide 4'-kinase -
  MRO13_RS04850 (MRO13_04845) - 1031299..1031478 (+) 180 WP_154167670.1 Trm112 family protein -
  MRO13_RS04855 (MRO13_04850) kdsB 1031478..1032224 (+) 747 WP_154167672.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 83882.98 Da        Isoelectric Point: 9.2970

>NTDB_id=676284 MRO13_RS04835 WP_350940272.1 1026283..1028526(+) (comEC) [Vibrio metschnikovii strain 20CO01TI02]
MALLSNYWTLASFSLTILSAPFWPWMPKWPIIIGVIVVLMMSLVTRRGRGCIGIALALVLIITHGNKVTAQSNNILQFAT
DITIKGVADSFFTANRYGFSGSFVVRSINGQSLPRFLSPTVRLNSPIALQLGDHAQFVVQAKPIYGRLNEVGFDQEAFFL
SQGWSAQATVRPNTAYQIIPSSSLRAIFFQQIEQRTRSSEVQGFILALTFGERSGITEQQWLELRNSGLIHLTAISGLHI
GMAFGFGYLLGGMCSRLLRKGLWLPFVCGGLFALGYAWLAGFTLPTQRALMMCWLNILLVMFNVRVTAIQRVLLTLAAVL
ALDPFASLSTSFWLSFLAVSFVIYQVSVIDSRWPLWKKVLAGHLLLVMLMAPVTAYFFSGVSLYSALYNLVFIPWFSFVV
VPLLFIVLCGNVLIADQVQWLWTWVEAALMPFSWSLGFAEHSWLPVNQTWQYSLLALFLVMMLRPLLTARSLIAIGLLFS
ATWLTIQPKVYWQVDMLDVGHGLAMVIERNGRYVLYDTGSSWHEGSVATSLIIPLLTRRGGLDALDGVIISHSDNDHAGG
LADIQSRLKPAWIRASYRNEHFSPCIQGEFWQWQELTFEVVWPPRLVDRADNPHSCVVRMVDKQYGHSVLLTGDVTAIGE
WLLSRDALLDSDVLVVPHHGSQTSSTQAFIEKVNPQLAIASLAKGHRWRLPHPDVLARYQSLDIPWLDTGEVGQITLRYQ
GSQRQLFTLRGGRITPWYRQMLRKEVE

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=676284 MRO13_RS04835 WP_350940272.1 1026283..1028526(+) (comEC) [Vibrio metschnikovii strain 20CO01TI02]
ATGGCTCTCTTATCGAATTACTGGACGTTGGCTTCGTTCTCGTTAACGATACTCTCTGCCCCATTTTGGCCTTGGATGCC
CAAATGGCCTATTATCATTGGCGTTATTGTTGTGTTGATGATGAGTCTCGTGACACGCCGAGGCAGGGGATGCATCGGAA
TTGCACTGGCCTTAGTGTTGATAATAACACACGGAAATAAAGTAACCGCACAGTCCAATAATATCTTACAATTTGCGACA
GATATTACCATAAAAGGTGTCGCTGACAGCTTTTTTACTGCAAATCGTTACGGTTTTAGTGGCTCTTTTGTGGTGAGATC
AATTAATGGTCAATCTTTACCCCGATTTTTGTCTCCCACGGTACGTTTAAATTCCCCGATCGCCTTACAATTGGGTGATC
ATGCTCAATTTGTGGTACAGGCGAAGCCGATTTATGGGCGATTGAATGAAGTCGGGTTTGATCAAGAAGCCTTTTTTCTG
AGTCAAGGCTGGAGCGCACAAGCGACCGTTCGTCCCAATACAGCTTATCAAATCATCCCCAGTTCAAGTTTGCGGGCGAT
ATTTTTTCAACAGATTGAGCAACGAACGCGATCCAGCGAGGTTCAAGGCTTTATTTTAGCCCTCACTTTTGGTGAGCGTA
GCGGGATTACTGAACAGCAGTGGTTGGAATTACGTAATAGCGGTTTAATCCATCTCACGGCGATCTCAGGGTTGCACATT
GGTATGGCATTTGGTTTTGGCTATTTGTTGGGGGGGATGTGTAGCCGCCTTTTGAGAAAGGGCTTATGGCTACCTTTTGT
TTGCGGTGGATTGTTTGCACTTGGTTATGCTTGGCTGGCAGGTTTTACGCTACCGACTCAGCGAGCATTGATGATGTGTT
GGTTAAATATTCTATTAGTCATGTTTAATGTTCGAGTGACCGCTATTCAACGGGTATTATTAACGTTAGCTGCGGTATTG
GCTTTGGACCCTTTTGCTTCATTAAGCACAAGTTTCTGGTTATCTTTTTTAGCGGTCAGTTTTGTTATTTACCAAGTCTC
CGTCATCGATAGCCGATGGCCGCTATGGAAGAAAGTGCTTGCTGGTCATCTATTATTAGTGATGTTAATGGCTCCGGTGA
CGGCTTACTTCTTCTCTGGCGTTAGCCTTTATTCCGCGCTTTATAATCTCGTGTTTATTCCTTGGTTCAGCTTTGTGGTT
GTTCCCTTACTGTTTATTGTCTTGTGTGGCAATGTGTTGATCGCCGATCAAGTCCAGTGGCTTTGGACTTGGGTTGAGGC
GGCTTTAATGCCGTTTAGCTGGTCGTTAGGTTTTGCAGAACATAGCTGGTTACCGGTTAACCAAACGTGGCAATATAGTT
TGTTGGCCTTATTTTTAGTGATGATGTTACGGCCACTTTTGACCGCGCGATCTCTTATTGCGATTGGGTTACTTTTTAGC
GCGACTTGGTTAACGATACAACCGAAGGTCTACTGGCAAGTGGATATGTTGGATGTTGGACATGGCTTGGCGATGGTTAT
TGAGCGTAACGGACGTTATGTTTTATACGATACAGGGAGTAGTTGGCATGAAGGCAGCGTGGCGACATCACTGATTATTC
CATTATTAACTCGACGCGGAGGACTAGATGCCCTTGATGGCGTGATCATTAGCCATAGTGATAATGATCACGCGGGAGGA
TTAGCCGATATTCAATCGCGGCTAAAACCAGCTTGGATTCGCGCTAGTTACCGTAATGAACATTTCTCTCCGTGTATTCA
AGGTGAATTCTGGCAATGGCAAGAATTGACGTTTGAAGTCGTGTGGCCACCTCGTTTGGTTGATAGAGCGGATAACCCTC
ATTCTTGTGTAGTGCGTATGGTTGATAAGCAATATGGGCATAGTGTGTTGTTGACCGGTGATGTGACGGCGATTGGTGAG
TGGTTACTCAGTCGTGACGCGTTATTAGACAGTGATGTGTTAGTGGTTCCTCATCATGGAAGTCAAACGTCGTCTACACA
AGCGTTTATAGAAAAGGTCAATCCACAGTTGGCGATTGCTTCATTGGCGAAAGGTCATCGATGGCGATTACCTCACCCAG
ACGTTCTCGCACGTTATCAATCTTTAGACATTCCGTGGCTTGATACGGGAGAGGTCGGACAAATAACACTCCGTTACCAA
GGATCTCAACGTCAGCTTTTCACCTTACGCGGTGGGCGAATCACGCCTTGGTATAGGCAGATGCTACGTAAAGAGGTAGA
ATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-463)

Domain of unknown function (DUF4131) (DUF4131)

(25-173)

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

52.139

100

0.522
  comEC Vibrio parahaemolyticus RIMD 2210633

41.192

100

0.416
  comEC Vibrio campbellii strain DS40M4

41.301

100

0.416