Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   MRO13_RS01495 Genome accession   NZ_CP095311
Coordinates   325000..325632 (-) Length   210 a.a.
NCBI ID   WP_004394497.1    Uniprot ID   A0A7X4XR47
Organism   Vibrio metschnikovii strain 20CO01TI02     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 320000..330632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRO13_RS01475 (MRO13_01475) - 320205..321416 (+) 1212 WP_004394493.1 aspartate aminotransferase family protein -
  MRO13_RS01480 (MRO13_01480) astA 321514..322533 (+) 1020 WP_040903963.1 arginine N-succinyltransferase -
  MRO13_RS01485 (MRO13_01485) astD 322555..324015 (+) 1461 WP_004394495.1 succinylglutamate-semialdehyde dehydrogenase -
  MRO13_RS01490 (MRO13_01490) - 324107..324901 (+) 795 WP_350940002.1 DUF1338 domain-containing protein -
  MRO13_RS01495 (MRO13_01495) crp 325000..325632 (-) 633 WP_004394497.1 cAMP-activated global transcriptional regulator CRP Regulator
  MRO13_RS01500 (MRO13_01500) - 325924..326793 (-) 870 WP_004394498.1 phosphoribulokinase -
  MRO13_RS01505 (MRO13_01505) - 326889..327098 (-) 210 WP_004394499.1 YheU family protein -
  MRO13_RS01510 (MRO13_01510) - 327179..328147 (-) 969 WP_004394500.1 hydrolase -
  MRO13_RS01515 (MRO13_01515) - 328173..328643 (-) 471 WP_154170012.1 TIGR02444 family protein -
  MRO13_RS01520 (MRO13_01520) - 328643..330562 (-) 1920 WP_115152783.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23651.45 Da        Isoelectric Point: 7.8388

>NTDB_id=676277 MRO13_RS01495 WP_004394497.1 325000..325632(-) (crp) [Vibrio metschnikovii strain 20CO01TI02]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=676277 MRO13_RS01495 WP_004394497.1 325000..325632(-) (crp) [Vibrio metschnikovii strain 20CO01TI02]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACACTAGAGTGGTTCCTTTCACATTGTCATATTCATAAGTACCCTTCAAA
AAGCACGCTGATCCATGCGGGCGAAAAAGCGGAAACCTTGTACTACATTGTTAAAGGTTCTGTTGCGGTACTAATTAAAG
ACGAAGAAGGTAAAGAGATGATTCTTTCTTACCTTAACCAAGGTGATTTCATCGGCGAGCTTGGTCTGTTCGAAGAAGAT
CAAGAACGTACCGCTTGGGTTCGAGCTAAATCCCCTTGTGAAGTCGCGGAAATTTCTTTTAAGAAGTTCCGTCAATTGAT
TCAAGTTAACCCCGATATCCTGATGCGTCTATCAGGGCAAATGGCTCGTCGCCTACAAGTGACCAGCCAAAAAGTCGGTG
ATTTGGCGTTCCTTGATGTGACTGGTCGTATTGCACAAACTCTACTAAACCTAGCAAAACAACCCGATGCAATGACTCAC
CCTGATGGGATGCAAATCAAAATCACTCGTCAAGAAATTGGTCAAATCGTTGGTTGCTCTCGTGAAACCGTTGGCCGGAT
TCTGAAAATGCTTGAAGAGCAAAATCTGATATCAGCACACGGTAAAACCATCGTGGTCTACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X4XR47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.571

100

0.986
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467