Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   KF715C_RS08195 Genome accession   NZ_AP015029
Coordinates   1800514..1802727 (+) Length   737 a.a.
NCBI ID   WP_096425761.1    Uniprot ID   -
Organism   Pseudomonas putida strain KF715     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1795514..1807727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KF715C_RS08175 (KF715C_ch15980) - 1797394..1798017 (+) 624 WP_023049045.1 glutathione S-transferase -
  KF715C_RS08180 (KF715C_ch15990) - 1798153..1799085 (+) 933 WP_016485471.1 ABC transporter ATP-binding protein -
  KF715C_RS08185 (KF715C_ch16000) - 1799082..1799861 (+) 780 WP_016485472.1 ABC transporter permease -
  KF715C_RS08190 (KF715C_ch16010) - 1799745..1800371 (-) 627 WP_016485473.1 DUF2062 domain-containing protein -
  KF715C_RS08195 (KF715C_ch16020) comA 1800514..1802727 (+) 2214 WP_096425761.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KF715C_RS08200 (KF715C_ch16030) exbB 1802932..1803567 (+) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KF715C_RS08205 (KF715C_ch16040) - 1803564..1803998 (+) 435 WP_016485476.1 ExbD/TolR family protein -
  KF715C_RS08210 (KF715C_ch16050) lpxK 1803998..1804999 (+) 1002 WP_096425762.1 tetraacyldisaccharide 4'-kinase -
  KF715C_RS08215 (KF715C_ch16060) - 1805044..1805229 (+) 186 WP_003247142.1 Trm112 family protein -
  KF715C_RS08220 (KF715C_ch16070) kdsB 1805226..1805990 (+) 765 WP_023048425.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KF715C_RS08225 (KF715C_ch16080) - 1805990..1806454 (+) 465 WP_023048424.1 low molecular weight protein-tyrosine-phosphatase -
  KF715C_RS08230 (KF715C_ch16090) murB 1806451..1807470 (+) 1020 WP_016485479.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79429.38 Da        Isoelectric Point: 10.0424

>NTDB_id=67564 KF715C_RS08195 WP_096425761.1 1800514..1802727(+) (comA) [Pseudomonas putida strain KF715]
MRTGMFALALGLLCPGFFPALPSVGWLITLAACAAVSVFTRVWPLGCFVLGLCWACWSAQQALDDRLAAGLDGRTLWLEG
RVVGLPARTAQGVRFELEAARSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVSGGWRDALRQRLLVVQANGRQAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLMAGLLYGL
VAGLARWGLWPARLPWLPCACALAMAAALVYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGAMLPLLLALVAVLLVEPL
AALLPGFWLSFAAVATLIYCFSGRLGGWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGGVGEALLWLAGGLLDGLFRLLALVAHQRPAWLAPALPLWAWLLVLLGALLVLLPRGVPLRGLGGVMLLALW
VPTEPVPLGQVEVWQLDVGQGLAVLLRTRHYNLLYDAGPARGETDLGERVVLPTLSKLGVGSLDLMVISHAHADHAGGAA
AIQRGLPVRRLIGGEALDDVPLHPCASGEQWNWDGVRFSLWRWADGQSSNDRSCVLLVEAQGERLLLAGDMEAAAERAWL
ADTEMPRIDWLQAPHHGSRSSSTEAFIRASAPRGVLISRGRNNSFGHPHVQVMERYQRHGLAVHDTAVEGALRLVLGRHG
EVEGIRGQRRFWRVRAE

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=67564 KF715C_RS08195 WP_096425761.1 1800514..1802727(+) (comA) [Pseudomonas putida strain KF715]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGTCCGGGCTTTTTCCCCGCATTGCCATCGGTCGGATGGTT
GATAACGCTGGCTGCCTGCGCGGCCGTCAGCGTGTTTACCCGCGTTTGGCCATTGGGCTGTTTTGTGCTGGGGCTGTGTT
GGGCGTGCTGGTCTGCCCAGCAGGCCCTTGACGATCGCCTGGCTGCCGGCCTGGACGGCCGCACCTTGTGGCTGGAGGGG
CGGGTGGTCGGCCTGCCAGCGCGAACTGCGCAGGGGGTGCGCTTCGAGCTGGAGGCGGCACGCTCGCGGCGGGCCGAACT
GCCGCAACGGCTGCAACTGAGCTGGTTCGATGGGCCGCCGCTGCGGGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCGGCCGGGCTGCTCAACCCACATGGGCCCGACCGGGAGGCGCAACTGCTGGCGCGGCGGGTGGGCGCCACCGGT
ACGGTAAAAGCCGGGCAGCTGCTGGCGCCGGTGAGCGGTGGTTGGCGCGATGCGCTGCGTCAGCGCTTGCTGGTGGTCCA
AGCCAATGGCCGGCAGGCCGCATTGGTGGCACTGGTGCTGGGTGACGGCGCTGGCCTGGCCCGGGAGGACTGGCAGACGT
TGCAGGCCACCGGTACGGTGCACTTGCTGGTTATTTCTGGCCAGCACATCGGCCTCATGGCCGGTCTGCTGTACGGCCTG
GTGGCCGGGCTGGCGCGTTGGGGGCTGTGGCCCGCCCGGTTGCCGTGGCTGCCCTGTGCCTGTGCCCTGGCCATGGCGGC
GGCGTTGGTCTACGGCTGGCTGGCCGGTGCGGGTGTACCGGTGCAGCGTGCCTGCCTGATGCTGGCGGTAGTGCTGTTGT
GGCGCCTGCGTTTTCGCCACCTCGGCGCAATGCTGCCGCTATTGCTGGCGCTGGTCGCGGTGCTGCTGGTCGAACCCTTG
GCGGCGCTGCTGCCTGGGTTCTGGCTGTCGTTTGCCGCAGTGGCCACGCTCATCTACTGCTTCAGCGGCCGTTTGGGCGG
TTGGCGGCCCTGGCAGGCCTGGACGCGCGCGCAATGGGTGATCGCCATCGGCTTGCTGCCGGTGTTGCTGGCCACAGGTT
TACCGGTGAGTCTGAGTGCGCCGCTGGCCAATCTTGTCGCGGTGCCATGGGTTAGCCTGGCGGTGTTGCCGTTGGCGTTG
CTGGGGACGTTGCTGCTGCCGCTGGGTGGGGTAGGGGAAGCGTTGCTGTGGCTGGCGGGTGGCCTGCTGGATGGGCTGTT
CCGGCTGTTGGCGTTGGTGGCGCATCAGCGCCCGGCGTGGCTGGCCCCGGCCTTGCCGTTGTGGGCCTGGCTGCTGGTAT
TGCTGGGTGCGCTGCTGGTGCTGCTGCCTCGTGGCGTGCCTTTGCGGGGGTTGGGTGGGGTCATGTTGTTGGCGCTGTGG
GTGCCCACGGAGCCGGTGCCGCTCGGCCAGGTCGAGGTCTGGCAGCTAGACGTTGGCCAAGGGCTGGCGGTGCTGTTGCG
TACCCGGCATTACAACCTGCTGTACGACGCCGGGCCGGCCAGAGGGGAGACCGACCTGGGCGAGCGGGTGGTGCTCCCGA
CCTTGAGCAAGCTGGGGGTGGGCAGCCTGGACTTGATGGTCATCAGCCATGCGCATGCCGACCATGCGGGCGGTGCTGCG
GCCATACAGCGTGGGCTGCCGGTCAGGCGGCTGATCGGTGGGGAAGCGCTGGATGATGTGCCGTTGCACCCTTGTGCCAG
TGGCGAACAATGGAACTGGGATGGCGTGCGCTTTTCGCTGTGGCGCTGGGCGGACGGGCAGAGTAGCAATGACCGTTCCT
GTGTCTTGCTGGTAGAGGCGCAGGGTGAGCGCTTGCTGCTGGCGGGGGATATGGAAGCTGCGGCCGAACGGGCCTGGCTG
GCTGACACAGAAATGCCGCGTATCGACTGGTTGCAGGCACCGCATCATGGCAGCCGCAGTTCGTCCACCGAGGCGTTCAT
CCGGGCTAGTGCGCCGCGCGGGGTATTGATTTCGCGAGGGCGTAACAACAGCTTCGGGCACCCGCATGTGCAGGTAATGG
AGCGTTATCAGCGGCATGGTCTGGCGGTGCATGACACGGCGGTGGAGGGGGCGTTGCGGTTGGTGTTGGGGCGGCATGGG
GAGGTTGAGGGTATCAGGGGGCAGCGGCGGTTTTGGCGGGTTCGAGCTGAGTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.198

98.1

0.581
  comA Ralstonia pseudosolanacearum GMI1000

33.924

100

0.364

Multiple sequence alignment