Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KF715C_RS08200 Genome accession   NZ_AP015029
Coordinates   1802932..1803567 (+) Length   211 a.a.
NCBI ID   WP_016391244.1    Uniprot ID   -
Organism   Pseudomonas putida strain KF715     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1797932..1808567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KF715C_RS08180 (KF715C_ch15990) - 1798153..1799085 (+) 933 WP_016485471.1 ABC transporter ATP-binding protein -
  KF715C_RS08185 (KF715C_ch16000) - 1799082..1799861 (+) 780 WP_016485472.1 ABC transporter permease -
  KF715C_RS08190 (KF715C_ch16010) - 1799745..1800371 (-) 627 WP_016485473.1 DUF2062 domain-containing protein -
  KF715C_RS08195 (KF715C_ch16020) comA 1800514..1802727 (+) 2214 WP_096425761.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KF715C_RS08200 (KF715C_ch16030) exbB 1802932..1803567 (+) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KF715C_RS08205 (KF715C_ch16040) - 1803564..1803998 (+) 435 WP_016485476.1 ExbD/TolR family protein -
  KF715C_RS08210 (KF715C_ch16050) lpxK 1803998..1804999 (+) 1002 WP_096425762.1 tetraacyldisaccharide 4'-kinase -
  KF715C_RS08215 (KF715C_ch16060) - 1805044..1805229 (+) 186 WP_003247142.1 Trm112 family protein -
  KF715C_RS08220 (KF715C_ch16070) kdsB 1805226..1805990 (+) 765 WP_023048425.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KF715C_RS08225 (KF715C_ch16080) - 1805990..1806454 (+) 465 WP_023048424.1 low molecular weight protein-tyrosine-phosphatase -
  KF715C_RS08230 (KF715C_ch16090) murB 1806451..1807470 (+) 1020 WP_016485479.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=67565 KF715C_RS08200 WP_016391244.1 1802932..1803567(+) (exbB) [Pseudomonas putida strain KF715]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=67565 KF715C_RS08200 WP_016391244.1 1802932..1803567(+) (exbB) [Pseudomonas putida strain KF715]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTCGGTCAGGTATGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCTTGCGCGCCGATTCGCCATTGGGCGAAATCCTTGCTGCTGGCCTGGCCAAC
TCGCGTCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGCGTCATTCACGAACTGGAGCGCTACAT
CAGCACGCTCGGCACCATCGCCGCCATGGCGCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAAATGACCGCCAATGCGGCCGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCCGGCCTCATGGTCGGCATCCCGGCAGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAACAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829

Multiple sequence alignment