Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   MUA78_RS06625 Genome accession   NZ_CP095116
Coordinates   1307203..1307649 (+) Length   148 a.a.
NCBI ID   WP_001791207.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6156     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1302203..1312649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA78_RS06590 (MUA78_06585) - 1302697..1302900 (+) 204 WP_000087561.1 YqgQ family protein -
  MUA78_RS06595 (MUA78_06590) - 1302897..1303883 (+) 987 WP_000161315.1 ROK family glucokinase -
  MUA78_RS06600 (MUA78_06595) - 1303883..1304212 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  MUA78_RS06605 (MUA78_06600) - 1304209..1304832 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  MUA78_RS06610 (MUA78_06605) comGA 1304884..1305858 (+) 975 WP_000697222.1 competence type IV pilus ATPase ComGA Machinery gene
  MUA78_RS06615 (MUA78_06610) comGB 1305830..1306900 (+) 1071 WP_262515456.1 competence type IV pilus assembly protein ComGB Machinery gene
  MUA78_RS06620 (MUA78_06615) comGC 1306914..1307225 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  MUA78_RS06625 (MUA78_06620) comGD 1307203..1307649 (+) 447 WP_001791207.1 competence type IV pilus minor pilin ComGD Machinery gene
  MUA78_RS06630 (MUA78_06625) comGE 1307636..1307935 (+) 300 WP_029549199.1 hypothetical protein Machinery gene
  MUA78_RS06635 (MUA78_06630) comGF 1307853..1308350 (+) 498 WP_029656266.1 competence type IV pilus minor pilin ComGF Machinery gene
  MUA78_RS06640 (MUA78_06635) - 1308447..1308593 (+) 147 WP_001789879.1 hypothetical protein -
  MUA78_RS06645 (MUA78_06640) - 1308583..1309107 (+) 525 WP_001015120.1 shikimate kinase -
  MUA78_RS06650 (MUA78_06645) gcvT 1309266..1310357 (+) 1092 WP_250406248.1 glycine cleavage system aminomethyltransferase GcvT -
  MUA78_RS06655 (MUA78_06650) gcvPA 1310377..1311723 (+) 1347 WP_000019686.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17113.28 Da        Isoelectric Point: 10.3312

>NTDB_id=675576 MUA78_RS06625 WP_001791207.1 1307203..1307649(+) (comGD) [Staphylococcus aureus strain IVB6156]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTLTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=675576 MUA78_RS06625 WP_001791207.1 1307203..1307649(+) (comGD) [Staphylococcus aureus strain IVB6156]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACATTGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGATAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986