Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   MUA63_RS04925 Genome accession   NZ_CP095107
Coordinates   1039444..1040073 (+) Length   209 a.a.
NCBI ID   WP_262611977.1    Uniprot ID   -
Organism   Staphylococcus delphini strain IVB6226     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1034444..1045073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA63_RS04900 (MUA63_04890) - 1035357..1036355 (-) 999 WP_262611975.1 aromatic acid exporter family protein -
  MUA63_RS04905 (MUA63_04895) map 1036452..1037213 (+) 762 WP_019166460.1 type I methionyl aminopeptidase -
  MUA63_RS04910 (MUA63_04900) - 1037311..1037700 (+) 390 WP_262611976.1 hypothetical protein -
  MUA63_RS04915 (MUA63_04905) liaF 1037713..1038414 (+) 702 WP_096597675.1 cell wall-active antibiotics response protein LiaF -
  MUA63_RS04920 (MUA63_04910) vraS 1038411..1039454 (+) 1044 WP_019166463.1 sensor histidine kinase Regulator
  MUA63_RS04925 (MUA63_04915) vraR 1039444..1040073 (+) 630 WP_262611977.1 response regulator transcription factor Regulator
  MUA63_RS04930 (MUA63_04920) - 1040708..1041289 (-) 582 WP_262611978.1 carbonic anhydrase -
  MUA63_RS04935 (MUA63_04925) - 1041322..1042668 (-) 1347 WP_262611979.1 YihY/virulence factor BrkB family protein -
  MUA63_RS04940 (MUA63_04930) - 1042884..1043171 (-) 288 WP_014613485.1 YtxH domain-containing protein -
  MUA63_RS04945 (MUA63_04935) - 1043179..1043637 (-) 459 WP_262611980.1 low molecular weight protein-tyrosine-phosphatase -
  MUA63_RS04950 (MUA63_04940) - 1043771..1043974 (+) 204 WP_019169369.1 DUF1128 family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23412.10 Da        Isoelectric Point: 5.3673

>NTDB_id=675485 MUA63_RS04925 WP_262611977.1 1039444..1040073(+) (vraR) [Staphylococcus delphini strain IVB6226]
MTIKVLFVDDHEMVRIGISSYLSTQPDIEVVGEGASGKEAIAKAHELKPDLILMDLVMTDMDGVEATMQIKKDLPHIKVV
MLTSYIEDKEVYRALDAGVDSYILKTTSANDIAEAVRKTSRGESVFEAEVLVKMRNRMKQRAELYELLTEREMEILLLIS
KGYSNQGIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHGLIE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=675485 MUA63_RS04925 WP_262611977.1 1039444..1040073(+) (vraR) [Staphylococcus delphini strain IVB6226]
ATGACAATTAAAGTATTATTTGTTGATGATCATGAAATGGTACGTATAGGGATTTCAAGTTATTTATCAACACAACCCGA
TATCGAAGTGGTGGGGGAAGGCGCCTCAGGTAAGGAAGCGATCGCAAAAGCCCACGAACTGAAACCGGATTTGATTTTAA
TGGATTTAGTGATGACGGATATGGACGGCGTGGAAGCGACAATGCAAATTAAGAAAGATCTGCCACATATTAAAGTCGTA
ATGCTGACAAGTTATATTGAAGATAAAGAAGTGTATCGTGCATTAGATGCCGGTGTCGATAGTTATATTTTAAAAACGAC
AAGTGCTAATGATATTGCGGAAGCGGTACGTAAAACGAGTCGTGGTGAGTCTGTATTTGAAGCGGAAGTATTAGTGAAAA
TGCGCAATCGAATGAAGCAACGTGCGGAGTTATATGAGTTGTTGACTGAGCGCGAGATGGAAATTTTGTTATTGATTTCA
AAAGGCTATTCGAACCAAGGAATTGCGAGTGCGTCACATATTACCATTAAGACGGTAAAGACGCATGTGAGTAATATTTT
AAGTAAACTTGAAGTGCAAGACCGTACGCAAGCAGTCATTTATGCTTTCCAACACGGCTTGATTGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

92.344

100

0.923
  degU Bacillus subtilis subsp. subtilis str. 168

36.161

100

0.388