Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG346_RS24640 Genome accession   NZ_CP109394
Coordinates   5288734..5289732 (+) Length   332 a.a.
NCBI ID   WP_266681405.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01530 strain NBC 01530     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5283734..5294732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG346_RS24615 (OG346_24625) - 5284019..5284684 (+) 666 WP_266681415.1 TetR/AcrR family transcriptional regulator -
  OG346_RS24620 (OG346_24630) - 5284795..5286342 (+) 1548 WP_405671812.1 MFS transporter -
  OG346_RS24625 (OG346_24635) - 5286451..5286981 (-) 531 WP_405671814.1 MarR family winged helix-turn-helix transcriptional regulator -
  OG346_RS24630 (OG346_24640) - 5287131..5287922 (+) 792 WP_405671815.1 dioxygenase -
  OG346_RS24635 (OG346_24645) - 5288020..5288538 (-) 519 WP_405671817.1 GNAT family N-acetyltransferase -
  OG346_RS24640 (OG346_24650) rpoS 5288734..5289732 (+) 999 WP_266681405.1 RNA polymerase sigma factor RpoD/SigA Regulator
  OG346_RS24645 (OG346_24655) - 5290244..5290963 (+) 720 WP_266681403.1 TetR/AcrR family transcriptional regulator -
  OG346_RS24650 (OG346_24660) - 5291059..5292024 (-) 966 WP_266681401.1 YafY family protein -
  OG346_RS24655 (OG346_24665) - 5292087..5293652 (+) 1566 WP_405671818.1 MFS transporter -
  OG346_RS24660 (OG346_24670) - 5293834..5294127 (+) 294 WP_405671819.1 hypothetical protein -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37300.20 Da        Isoelectric Point: 5.5729

>NTDB_id=675484 OG346_RS24640 WP_266681405.1 5288734..5289732(+) (rpoS) [Streptomyces sp. NBC_01530 strain NBC 01530]
MATRAVARRKSATGETADRASSVRAHAGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFARQVLDGDEESKAE
ASREELQALVDDGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEPAEIAKELDTKPDRVIDVLDWARDPVSLNMAVDDEGETQF
GDLLEDTSAVSPEQSVLTLLRSEELDHLIGRLDPRTASIIKMRYGIDDGRERTLTEVGKKHGLTRERIRQIEKHALLELK
KLARSTGFEAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=675484 OG346_RS24640 WP_266681405.1 5288734..5289732(+) (rpoS) [Streptomyces sp. NBC_01530 strain NBC 01530]
ATGGCAACCCGTGCCGTCGCCCGTCGCAAGTCCGCCACCGGCGAGACGGCCGACAGGGCAAGCAGTGTTCGCGCTCACGC
CGGCGAGATCGCCGACCGTGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGCACGCCGCTGCTCGACGCCGCCAAGG
AGGTCGAGCTGTCACAGATCATCGAGGCGGGTGTGTTCGCGCGACAGGTCCTCGACGGAGACGAGGAGTCCAAGGCCGAG
GCCTCCCGCGAGGAGCTTCAGGCCCTGGTCGACGACGGTGAGCGGGCGAAGGACGTCTTCATCCGCTCCAACCTCCGCCT
GGTCGTGGCCGTGGCCCGGCGTTACCCGCGCAGCGGCCTCCCCCTCCTCGACCTGATCCAGGAGGGCAACGCCGGACTGG
TGCGCGCGGTCGAGAAGTTCGACTACGCCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGTCAGGCGATC
ACCCGCTCGATAGCGGACCAGTCGCGCACCATCCGCCTGCCCGTCCACCTGGTGGAGGAGCTGGGCCGGATCCGCCGTGT
GCAGCGCGAGTTCAACCGCGAGCACGGCCGTGACCCGGAGCCCGCGGAGATCGCCAAGGAGCTCGACACGAAGCCGGACC
GCGTGATCGACGTCCTGGACTGGGCCCGCGACCCGGTCTCCCTGAACATGGCGGTGGACGACGAGGGTGAGACCCAGTTC
GGCGACCTCCTGGAGGACACCTCGGCGGTCTCCCCCGAGCAGTCCGTCCTGACCCTGCTGCGCAGCGAGGAACTCGACCA
CCTCATCGGCCGCCTCGACCCCCGCACGGCCTCCATCATCAAGATGCGCTACGGCATCGACGACGGCCGCGAGCGCACCC
TGACGGAGGTCGGCAAGAAGCACGGCCTGACCCGCGAGCGCATCCGCCAGATCGAGAAGCACGCCCTGCTGGAGCTGAAG
AAGCTGGCCCGGTCCACGGGCTTCGAGGCGGCGGCCTGA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70 region 3 (Sigma70_r3)

(179-255)

Sigma-70 region 2 (Sigma70_r2)

(100-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.134

90.06

0.361