Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   JMUB0001_RS04540 Genome accession   NZ_AP014956
Coordinates   949740..950369 (+) Length   209 a.a.
NCBI ID   WP_002469716.1    Uniprot ID   -
Organism   Staphylococcus capitis strain TW2795     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 944740..955369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMUB0001_RS04510 (JMUB0001_881) - 944922..945464 (+) 543 WP_002435927.1 hypothetical protein -
  JMUB0001_RS04515 (JMUB0001_882) - 945542..946531 (-) 990 WP_002435886.1 aromatic acid exporter family protein -
  JMUB0001_RS04520 (JMUB0001_883) map 946705..947460 (+) 756 WP_002435911.1 type I methionyl aminopeptidase -
  JMUB0001_RS04525 (JMUB0001_884) - 947605..947991 (+) 387 WP_002453601.1 hypothetical protein -
  JMUB0001_RS04530 (JMUB0001_885) liaF 948006..948707 (+) 702 WP_002435891.1 cell wall-active antibiotics response protein LiaF -
  JMUB0001_RS04535 (JMUB0001_886) vraS 948704..949750 (+) 1047 WP_096389199.1 sensor histidine kinase Regulator
  JMUB0001_RS04540 (JMUB0001_887) vraR 949740..950369 (+) 630 WP_002469716.1 two-component system response regulator VraR Regulator
  JMUB0001_RS04545 (JMUB0001_888) - 950434..951696 (-) 1263 WP_096389201.1 YihY/virulence factor BrkB family protein -
  JMUB0001_RS04550 (JMUB0001_889) - 952034..952318 (-) 285 WP_002435890.1 hypothetical protein -
  JMUB0001_RS04555 (JMUB0001_890) - 952325..952789 (-) 465 WP_002435947.1 low molecular weight protein-tyrosine-phosphatase -
  JMUB0001_RS04560 (JMUB0001_891) - 952930..953136 (+) 207 WP_049427714.1 DUF1128 domain-containing protein -
  JMUB0001_RS04565 (JMUB0001_892) - 953150..954391 (+) 1242 WP_096389203.1 aminopeptidase -
  JMUB0001_RS04570 (JMUB0001_893) - 954494..955024 (+) 531 WP_002453596.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23645.28 Da        Isoelectric Point: 4.8997

>NTDB_id=67535 JMUB0001_RS04540 WP_002469716.1 949740..950369(+) (vraR) [Staphylococcus capitis strain TW2795]
MAIKVLFVDDHEMVRIGISSYLSTQQDIEVVGEGASGKEAIEKAHELKPDLILMDLLMDDMDGVEATTEIKKDLPHIRVV
MLTSFIEDKEVYRALDAGVDSYILKTTSASDIADAVRKTYQGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=67535 JMUB0001_RS04540 WP_002469716.1 949740..950369(+) (vraR) [Staphylococcus capitis strain TW2795]
ATGGCGATTAAAGTATTGTTTGTTGATGACCATGAAATGGTTAGAATTGGTATTTCAAGCTATCTATCTACACAACAGGA
TATTGAAGTAGTTGGAGAAGGTGCTTCTGGTAAAGAAGCTATCGAAAAAGCCCATGAGTTGAAACCAGATTTAATTTTAA
TGGATTTACTTATGGATGATATGGATGGTGTAGAAGCTACTACTGAAATTAAAAAGGATTTACCTCACATAAGAGTAGTA
ATGTTAACAAGCTTTATCGAGGATAAAGAAGTTTATCGAGCATTAGATGCTGGGGTAGATAGTTATATCTTAAAAACGAC
TAGTGCGAGTGACATTGCTGACGCGGTACGTAAAACATATCAAGGGGAATCTGTTTTTGAACCAGAAGTACTTGTAAAAA
TGAGAAACCGCATGAAAAAACGTGCTGAGTTATATGAAATGCTTACAGAGCGTGAAATGGAAATTTTATTATTAATTGCC
AAAGGTTACTCTAACCAAGAAATTGCTAGCGCCTCTCATATCACTATTAAAACTGTTAAAACACACGTAAGTAATATATT
GAGTAAGTTAGAAGTTCAAGATAGAACTCAAGCTGTTATTTATGCTTTCCAACATAATTTGATTCAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

94.737

100

0.947
  degU Bacillus subtilis subsp. subtilis str. 168

33.929

100

0.364

Multiple sequence alignment