Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   JMUB0001_RS04535 Genome accession   NZ_AP014956
Coordinates   948704..949750 (+) Length   348 a.a.
NCBI ID   WP_096389199.1    Uniprot ID   -
Organism   Staphylococcus capitis strain TW2795     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 943704..954750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMUB0001_RS04505 (JMUB0001_880) - 943968..944693 (+) 726 WP_002469718.1 type 1 glutamine amidotransferase -
  JMUB0001_RS04510 (JMUB0001_881) - 944922..945464 (+) 543 WP_002435927.1 hypothetical protein -
  JMUB0001_RS04515 (JMUB0001_882) - 945542..946531 (-) 990 WP_002435886.1 aromatic acid exporter family protein -
  JMUB0001_RS04520 (JMUB0001_883) map 946705..947460 (+) 756 WP_002435911.1 type I methionyl aminopeptidase -
  JMUB0001_RS04525 (JMUB0001_884) - 947605..947991 (+) 387 WP_002453601.1 hypothetical protein -
  JMUB0001_RS04530 (JMUB0001_885) liaF 948006..948707 (+) 702 WP_002435891.1 cell wall-active antibiotics response protein LiaF -
  JMUB0001_RS04535 (JMUB0001_886) vraS 948704..949750 (+) 1047 WP_096389199.1 sensor histidine kinase Regulator
  JMUB0001_RS04540 (JMUB0001_887) vraR 949740..950369 (+) 630 WP_002469716.1 two-component system response regulator VraR Regulator
  JMUB0001_RS04545 (JMUB0001_888) - 950434..951696 (-) 1263 WP_096389201.1 YihY/virulence factor BrkB family protein -
  JMUB0001_RS04550 (JMUB0001_889) - 952034..952318 (-) 285 WP_002435890.1 hypothetical protein -
  JMUB0001_RS04555 (JMUB0001_890) - 952325..952789 (-) 465 WP_002435947.1 low molecular weight protein-tyrosine-phosphatase -
  JMUB0001_RS04560 (JMUB0001_891) - 952930..953136 (+) 207 WP_049427714.1 DUF1128 domain-containing protein -
  JMUB0001_RS04565 (JMUB0001_892) - 953150..954391 (+) 1242 WP_096389203.1 aminopeptidase -

Sequence


Protein


Download         Length: 348 a.a.        Molecular weight: 40135.59 Da        Isoelectric Point: 6.2461

>NTDB_id=67534 JMUB0001_RS04535 WP_096389199.1 948704..949750(+) (vraS) [Staphylococcus capitis strain TW2795]
MNHYLRAIGSMLILVYSMLTAFLFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNILIILLCIIVGSVLAYKINQQNDWLKS
QIERSIEGETVGINDQNLELYSETLEIYHTLVPLNQELHRLRMKTQNMTNENYNMNDVKVKKIIEDERQRLARELHDSVS
QQLFAASMMLSAIKESKLEPPLNQQIPVLEKMVQDSQLEMRALLLHLRPIGLKDKSLGEGIKDLVIDLQKKVPMKVVHEI
QDFKVPKGIEDHLFRITQEAISNTLRHSNGSKVTVELFNKEDYLLLRIQDNGKGFNVDEKFEQSYGLKNMRERALEIGAT
FHIVSLPDSGTRIEVKAPLNKEDESNGD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=67534 JMUB0001_RS04535 WP_096389199.1 948704..949750(+) (vraS) [Staphylococcus capitis strain TW2795]
ATGAATCACTACTTGAGAGCAATTGGTTCAATGCTAATACTTGTATATAGCATGCTAACTGCTTTTTTATTCATTGATAA
GGTGTTCGTCAATATTATTTATTTTCAAGGGATGTTTTACACCCAAATTTTTGGAATACCAGTATTTTTATTCCTAAATA
TATTAATCATCTTACTATGTATTATCGTTGGCTCTGTGTTAGCGTATAAAATCAATCAACAAAATGATTGGCTTAAGTCA
CAAATTGAAAGGTCTATTGAAGGTGAAACAGTAGGCATAAATGATCAAAACCTAGAGTTATACAGTGAAACGTTAGAAAT
TTACCATACTTTAGTTCCTTTAAATCAAGAATTACACCGATTGAGAATGAAAACGCAGAATATGACCAATGAAAATTATA
ATATGAATGATGTAAAAGTGAAGAAAATTATTGAAGACGAACGTCAACGTTTAGCAAGAGAACTACATGACTCAGTTAGT
CAGCAACTATTTGCAGCAAGTATGATGTTGTCAGCGATTAAAGAGTCAAAATTAGAACCACCTTTAAACCAACAAATACC
TGTACTAGAGAAGATGGTTCAAGACTCTCAGCTCGAAATGAGAGCATTATTATTACATCTAAGACCTATTGGTTTGAAAG
ACAAATCATTAGGAGAGGGTATTAAAGATTTAGTCATTGATCTTCAAAAGAAAGTCCCTATGAAAGTTGTTCATGAAATT
CAAGATTTCAAAGTACCAAAAGGGATAGAAGATCATTTGTTTAGAATCACCCAAGAGGCTATTTCTAATACATTACGACA
CTCTAATGGTTCTAAGGTAACAGTTGAATTATTTAATAAAGAAGATTATTTACTACTTAGAATTCAAGATAATGGTAAAG
GTTTTAATGTAGATGAAAAATTTGAACAGAGTTATGGATTAAAAAATATGAGAGAACGTGCTTTAGAGATTGGTGCCACA
TTCCATATCGTATCGTTACCGGATTCAGGTACGAGAATAGAAGTTAAAGCACCATTGAATAAGGAGGATGAATCAAATGG
CGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

93.294

98.563

0.92


Multiple sequence alignment