Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   MUU70_RS11405 Genome accession   NZ_CP095093
Coordinates   2383368..2383703 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain D103     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2378368..2388703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUU70_RS11385 (MUU70_11400) gcvT 2378978..2380078 (-) 1101 WP_058906182.1 glycine cleavage system aminomethyltransferase GcvT -
  MUU70_RS11390 (MUU70_11405) - 2380502..2382172 (+) 1671 WP_060562612.1 DEAD/DEAH box helicase -
  MUU70_RS11395 (MUU70_11410) - 2382190..2382984 (+) 795 WP_014305407.1 YqhG family protein -
  MUU70_RS11400 (MUU70_11415) sinI 2383161..2383334 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  MUU70_RS11405 (MUU70_11420) sinR 2383368..2383703 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  MUU70_RS11410 (MUU70_11425) tasA 2383751..2384536 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  MUU70_RS11415 (MUU70_11430) sipW 2384600..2385184 (-) 585 WP_367069085.1 signal peptidase I SipW -
  MUU70_RS11420 (MUU70_11435) tapA 2385156..2385827 (-) 672 WP_367069086.1 amyloid fiber anchoring/assembly protein TapA -
  MUU70_RS11425 (MUU70_11440) - 2386086..2386415 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  MUU70_RS11430 (MUU70_11445) - 2386455..2386634 (-) 180 WP_003153093.1 YqzE family protein -
  MUU70_RS11435 (MUU70_11450) comGG 2386691..2387068 (-) 378 WP_182069279.1 competence type IV pilus minor pilin ComGG Machinery gene
  MUU70_RS11440 (MUU70_11455) comGF 2387069..2387464 (-) 396 WP_077722593.1 competence type IV pilus minor pilin ComGF -
  MUU70_RS11445 (MUU70_11460) comGE 2387478..2387792 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  MUU70_RS11450 (MUU70_11465) comGD 2387776..2388213 (-) 438 WP_044053464.1 competence type IV pilus minor pilin ComGD Machinery gene
  MUU70_RS11455 (MUU70_11470) comGC 2388203..2388511 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=675316 MUU70_RS11405 WP_003153104.1 2383368..2383703(+) (sinR) [Bacillus velezensis strain D103]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=675316 MUU70_RS11405 WP_003153104.1 2383368..2383703(+) (sinR) [Bacillus velezensis strain D103]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991