Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   MP619_RS08355 Genome accession   NZ_CP095081
Coordinates   1662831..1663640 (-) Length   269 a.a.
NCBI ID   WP_129556027.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain WJ001     
Function   require for competence development (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1657539..1666752 1662831..1663640 within 0


Gene organization within MGE regions


Location: 1657539..1666752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP619_RS08330 (MP619_08300) - 1657539..1658650 (+) 1112 WP_089180045.1 IS3-like element IS981 family transposase -
  MP619_RS08335 (MP619_08305) - 1658661..1659092 (-) 432 WP_155782766.1 hypothetical protein -
  MP619_RS08340 (MP619_08310) - 1659413..1660435 (-) 1023 WP_129555386.1 IS30 family transposase -
  MP619_RS08345 (MP619_08315) - 1660627..1661738 (+) 1112 WP_089180045.1 IS3-like element IS981 family transposase -
  MP619_RS08350 (MP619_08320) - 1661874..1662749 (+) 876 WP_129556026.1 helix-turn-helix transcriptional regulator -
  MP619_RS08355 (MP619_08325) vicX 1662831..1663640 (-) 810 WP_129556027.1 MBL fold metallo-hydrolase Regulator
  MP619_RS08360 (MP619_08330) vicK 1663644..1664996 (-) 1353 WP_155782777.1 cell wall metabolism sensor histidine kinase VicK Regulator
  MP619_RS08365 (MP619_08335) vicR 1664989..1665699 (-) 711 WP_003049952.1 response regulator YycF Regulator
  MP619_RS08370 (MP619_08340) - 1665958..1666752 (+) 795 WP_003057217.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30158.33 Da        Isoelectric Point: 6.0739

>NTDB_id=675104 MP619_RS08355 WP_129556027.1 1662831..1663640(-) (vicX) [Streptococcus dysgalactiae strain WJ001]
MSENGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVMARKYHLD
VYANEKTWQLMDERNMLGKLDASQKHIFQRDKMLTFGDVDIESFGVSHDAVDPQFYRIMKDNKSFVMLTDTGYVSDRMTG
IIENADGYLIESNHDIEILRSGSYPWSLKQRILSDMGHLSNEDGAGAMIRSLGHKTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLAVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=675104 MP619_RS08355 WP_129556027.1 1662831..1663640(-) (vicX) [Streptococcus dysgalactiae strain WJ001]
ATGAGTGAAAATGGTTTTAAATACAGTATTTTGGCATCCGGGTCCACAGGCAATTGTTTTTATTTAGAAACACCTAAAAA
GCGATTATTAATTGACGCGGGGTTGACTGGTAAGAAAATCACCAGTCTCCTTGCTGAAATTGACCGCAAGCCTGAAGATT
TAGATGCTATTTTGATTACACATGAACATTCAGATCATATCAAGGGAGTGGGAGTGATGGCTCGCAAGTACCATTTGGAT
GTTTATGCCAACGAAAAAACATGGCAGTTGATGGATGAGCGTAATATGCTCGGGAAGCTTGATGCCTCCCAAAAACATAT
TTTCCAAAGAGATAAGATGTTGACCTTTGGAGATGTTGACATTGAAAGTTTTGGTGTTAGTCACGATGCGGTTGATCCTC
AGTTTTACCGTATCATGAAAGACAACAAATCGTTTGTGATGCTGACTGATACAGGTTATGTCAGCGACCGAATGACAGGT
ATTATTGAAAACGCAGATGGCTACTTGATTGAGTCCAATCATGACATTGAAATTTTACGGTCGGGTTCTTACCCTTGGAG
TTTAAAACAACGCATTTTGTCAGACATGGGCCATTTGTCAAATGAAGATGGCGCTGGAGCTATGATTAGAAGTTTAGGGC
ATAAGACCAAAAAAATCTATTTGGGTCATTTGAGTAAAGAAAATAACATCAAAGAGTTGGCTCACATGACCATGGTGAAC
CAATTAGCCATGGCAGATTTAGCGGTAGGTACAGACTTTACTGTTCATGACACTTCCCCAGACACAGCTTGTCCCTTGAC
GGATATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.58

100

0.766