Detailed information NTG0675099

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: MP619_RS06845
• Genome accession: NZ_CP095081
• Coordinates: 1334442..1335671 (-)
• Length: 409 a.a.
• NCBI ID: WP_003054192.1
• Uniprot ID: -
• Organism: Streptococcus dysgalactiae strain WJ001
• Function: require for competence development (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	1328189..1333721	1334442..1335671	flank	721

Gene organization within MGE regions

Location: 1328189..1335671

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MP619_RS06820 (MP619_06790)	-	1328195..1329217 (+)	1023	WP_129555386.1	IS30 family transposase	-
MP619_RS06825 (MP619_06795)	clpC	1329627..1331726 (+)	2100	WP_129555799.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
MP619_RS06830 (MP619_06800)	-	1331783..1332525 (-)	743	Protein_1297	hypothetical protein	-
MP619_RS06835 (MP619_06805)	-	1332699..1333721 (+)	1023	WP_129555386.1	IS30 family transposase	-
MP619_RS06840 (MP619_06810)	yihA	1333833..1334432 (-)	600	WP_129555801.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
MP619_RS06845 (MP619_06815)	clpX	1334442..1335671 (-)	1230	WP_003054192.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator

Sequence

Protein

• Length: 409 a.a.
• Molecular weight: 45060.54 Da
• Isoelectric Point: 4.5866

>NTDB_id=675099 MP619_RS06845 WP_003054192.1 1334442..1335671(-) (clpX) [Streptococcus dysgalactiae strain WJ001]
MAGNRTNDIKVYCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEVLNQYVVGQDR
AKRALSVAVYNHYKRVSFTESRDDEDVELQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEDIVKQRLGEKVIGFGQNSRKIDDNASYMQEIISEDIQKFGLIPEFIGRLPVVAALEQLNTSDLIQI
LTEPRNALVKQYQALLSYDGVELAFDKEALEAIANKAIERKTGARGLRSIIEETMLDIMFEIPSQEDVTKVRITKAAVEG
KSKPVLETA

Nucleotide

• Length: 1230 bp

>NTDB_id=675099 MP619_RS06845 WP_003054192.1 1334442..1335671(-) (clpX) [Streptococcus dysgalactiae strain WJ001]
ATGGCAGGAAATCGTACAAACGATATTAAAGTATATTGCTCATTTTGTGGTAAGAGCCAAGACGAAGTCAAAAAAATTAT
TGCAGGGAATAATGTTTTTATCTGTAATGAATGTGTGGCTTTGTCACAAGAAATTATTAAAGAAGAGTTAGCAGAAGAAG
TATTAGCTGACCTAACAGAAGTTCCAAAACCAAAAGAACTCCTTGAGGTTTTAAACCAGTATGTTGTTGGTCAAGATCGT
GCCAAACGTGCTTTATCAGTAGCTGTTTACAATCATTACAAACGCGTGTCATTCACGGAAAGTCGTGATGATGAAGATGT
TGAATTGCAAAAATCAAACATTTTAATGATTGGTCCAACAGGTTCAGGAAAGACTTTTCTCGCTCAAACCTTAGCTAAGA
GCTTAAATGTTCCTTTCGCGATTGCTGATGCAACCTCACTGACTGAAGCAGGTTATGTTGGAGAAGATGTGGAAAATATT
CTTCTCAAGCTTATCCAAGCAGCTGATTATAATGTGGAACGAGCAGAGCGTGGTATCATCTATGTCGATGAAATTGATAA
GATTGCTAAAAAAGGTGAAAATGTATCCATCACACGTGATGTTTCTGGTGAGGGAGTTCAACAGGCCTTGCTAAAAATCA
TTGAAGGAACGGTTGCTAGTGTTCCTCCTCAAGGTGGTCGTAAGCATCCAAATCAGGAAATGATTCAAATTGATACCAAA
AATATCTTGTTTATTGTTGGGGGAGCCTTTGACGGCATTGAAGACATTGTCAAACAACGTTTAGGAGAAAAAGTCATTGG
CTTTGGTCAAAACAGCCGAAAAATCGATGACAATGCTTCTTATATGCAAGAGATTATTTCAGAAGATATCCAAAAATTTG
GTCTTATCCCAGAGTTTATTGGACGCTTGCCAGTCGTAGCTGCTCTTGAACAACTAAACACATCAGATTTGATTCAAATT
TTGACAGAACCAAGAAATGCCCTAGTCAAGCAATATCAGGCTCTTCTTTCTTACGATGGCGTCGAATTGGCATTTGATAA
GGAAGCCTTAGAAGCCATTGCAAATAAAGCCATTGAGCGTAAGACAGGCGCGCGTGGTCTTCGTTCTATTATCGAAGAAA
CAATGTTAGACATTATGTTTGAAATTCCAAGCCAAGAAGATGTCACAAAAGTGCGTATCACCAAGGCTGCTGTCGAAGGC
AAGTCAAAACCCGTTTTAGAGACAGCTTAA

Domains

Predicted by InterproScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (110-305)

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-48)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (312-391)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	89.487	100	0.895
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.853	98.044	0.577