Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   MP619_RS06825 Genome accession   NZ_CP095081
Coordinates   1329627..1331726 (+) Length   699 a.a.
NCBI ID   WP_129555799.1    Uniprot ID   A0AAE9ZZX6
Organism   Streptococcus dysgalactiae strain WJ001     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1328189..1333721 1329627..1331726 within 0


Gene organization within MGE regions


Location: 1328189..1333721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP619_RS06820 (MP619_06790) - 1328195..1329217 (+) 1023 WP_129555386.1 IS30 family transposase -
  MP619_RS06825 (MP619_06795) clpC 1329627..1331726 (+) 2100 WP_129555799.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  MP619_RS06830 (MP619_06800) - 1331783..1332525 (-) 743 Protein_1297 hypothetical protein -
  MP619_RS06835 (MP619_06805) - 1332699..1333721 (+) 1023 WP_129555386.1 IS30 family transposase -

Sequence

Protein


Download         Length: 699 a.a.        Molecular weight: 77357.14 Da        Isoelectric Point: 4.9699

>NTDB_id=675098 MP619_RS06825 WP_129555799.1 1329627..1331726(+) (clpC) [Streptococcus dysgalactiae strain WJ001]
MTNYYDKDPFGNMDDIFNQLMGNMGGYRSENRRYLVNGREMTPEEFQAYRQTGRLSDKGTEQPTAQGHQTKKDGILAKLG
TNLTEEARQGKLDPVIGRNHEIQDTAEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGL
EAGTQYRGSFEENIQNMIQEVKEAGNIILFFDEIHQILGAGSTGGDSGSKGLADMLKPALSRGELTLIGATTQDEYRNTI
LKNAALARRFNEVKVNAPSAEDTFHILMGIRNLYEQHHNVILPDAVLKAAIDYSIQYIPQRSLPDKAIDLVDMTAAHLAA
QHPVTDLKSLEAEMTTQKNIQEEAVAKEDFERALTAKTRIEELQKQMDNHSEDQKVTATVNDIAESVERLTGVPVSNMGA
SDLERLKEISNRLKGHVIGQDGAVEAVARAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLALDLFGSKEAIIRLD
MSEYSDRTAVSKLIGTTAGYVGYDDNNNTLTERVRRNPYAIVLLDEIEKADPQVIPLLLQVLDDGRLTDGQGNTINFKNT
VIIATSNAGFGHQEDENTDQPAIMDRIAPYFRPEFLNRFNGVIEFNHLQKKDLEEIVDLMLAEVNQTIAKKGISLAISDD
AKAHLIELGYDHAMGVRPLRRVIEQEIRDRITDFYLDHPEVKNLQASLEQGQLVIHNKN

Nucleotide


Download         Length: 2100 bp        

>NTDB_id=675098 MP619_RS06825 WP_129555799.1 1329627..1331726(+) (clpC) [Streptococcus dysgalactiae strain WJ001]
ATGACAAATTATTATGACAAAGATCCTTTTGGAAACATGGATGATATCTTTAATCAACTAATGGGCAATATGGGTGGCTA
TCGCAGTGAAAATCGACGCTATTTAGTGAACGGACGCGAAATGACACCTGAAGAATTCCAGGCATATCGTCAAACTGGAC
GTCTAAGCGATAAAGGTACTGAACAACCTACAGCCCAAGGTCATCAGACCAAAAAGGATGGGATTTTAGCTAAACTTGGC
ACCAACTTAACGGAAGAAGCAAGACAAGGAAAACTTGATCCTGTTATTGGTCGCAATCACGAAATTCAAGACACTGCGGA
AATTTTAGCTCGCCGAACAAAGAATAATCCCGTTCTAGTCGGAGATGCCGGTGTTGGTAAAACAGCTGTGGTTGAAGGGC
TAGCTCAAGCTATTGTGAATGGTGACGTCCCTGCTGCTATCAAAAATAAAGAAATTATTTCCATTGATATTTCTGGCCTT
GAAGCAGGCACTCAGTACCGTGGCTCCTTTGAAGAAAATATCCAAAACATGATTCAAGAGGTTAAAGAAGCTGGGAATAT
TATTCTTTTCTTTGATGAAATTCATCAAATTCTTGGTGCAGGTTCCACTGGTGGTGACTCTGGGTCTAAAGGATTAGCTG
ATATGCTAAAACCTGCTCTTTCCCGTGGTGAATTGACACTGATTGGCGCCACAACTCAAGATGAATACCGCAATACCATT
TTAAAAAATGCTGCGCTTGCTCGTCGTTTTAATGAGGTTAAGGTAAACGCACCGTCTGCTGAGGACACCTTCCATATTTT
AATGGGAATCCGAAATCTTTACGAACAACACCATAATGTTATCCTTCCGGATGCTGTTCTTAAAGCTGCGATTGACTATT
CTATTCAATACATTCCTCAACGTAGTTTACCAGATAAAGCGATTGACTTAGTAGATATGACTGCTGCGCATTTAGCCGCT
CAGCATCCTGTGACTGACCTCAAGTCTCTAGAAGCTGAAATGACCACTCAAAAGAATATCCAAGAAGAGGCTGTGGCTAA
GGAAGATTTTGAGAGAGCTTTAACTGCTAAAACTCGAATTGAAGAATTGCAAAAACAAATGGACAACCATAGCGAAGACC
AAAAGGTTACTGCTACTGTCAATGACATTGCAGAATCCGTAGAGCGCCTGACTGGTGTCCCAGTGTCCAATATGGGAGCT
AGTGATTTGGAAAGACTCAAAGAAATTAGCAACCGCTTAAAAGGACACGTGATTGGCCAAGATGGAGCTGTTGAAGCTGT
GGCTCGTGCTATTCGCCGTAATCGAGCTGGTTTTGATGACGGCAATCGTCCTATCGGTTCCTTCCTCTTTGTTGGACCAA
CAGGTGTCGGTAAGACAGAGTTAGCCAAACAGCTAGCACTGGACCTCTTTGGTTCCAAAGAGGCTATTATTCGACTTGAC
ATGTCCGAATACAGTGATCGTACCGCTGTGTCCAAGTTAATAGGGACAACTGCCGGTTATGTCGGTTATGATGATAATAA
CAATACGTTAACGGAACGTGTTCGTCGCAACCCGTATGCGATTGTTCTATTGGATGAGATTGAAAAAGCCGATCCGCAAG
TCATTCCCCTTCTTCTCCAAGTACTGGATGATGGCCGATTAACAGATGGTCAGGGAAATACCATCAACTTTAAAAACACT
GTTATCATTGCTACTTCTAATGCTGGATTTGGGCATCAAGAAGATGAAAATACTGATCAACCTGCTATTATGGACCGTAT
TGCGCCTTACTTTAGACCAGAATTTCTCAATCGTTTCAACGGGGTTATCGAATTCAATCATCTGCAAAAAAAAGACTTAG
AAGAAATTGTTGATTTAATGTTAGCGGAAGTTAATCAAACCATAGCTAAAAAAGGAATCAGCTTAGCTATCTCTGATGAT
GCTAAAGCTCACTTGATTGAATTAGGTTATGACCATGCAATGGGAGTTCGACCATTACGCCGTGTCATCGAGCAAGAAAT
CCGAGACCGCATTACAGACTTTTACCTCGATCACCCAGAGGTCAAAAACCTACAAGCTAGTCTGGAACAGGGACAGTTAG
TCATTCACAACAAAAACTAA

Domains

Predicted by InterproScan.

AAA lid domain (AAA_lid_9)

(259-353)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(608-679)

AAA domain (Cdc48 subfamily) (AAA_2)

(443-600)

ATPase family associated with various cellular activities (AAA) (AAA)

(118-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

47.673

100

0.484
  clpE Streptococcus mutans UA159

46.544

100

0.472
  clpE Streptococcus pneumoniae Rx1

45.911

99.714

0.458
  clpE Streptococcus pneumoniae D39

45.911

99.714

0.458
  clpE Streptococcus pneumoniae R6

45.911

99.714

0.458
  clpE Streptococcus pneumoniae TIGR4

45.833

99.571

0.456
  clpC Bacillus subtilis subsp. subtilis str. 168

45.513

89.27

0.406
  clpC Streptococcus pneumoniae Rx1

40.943

97.139

0.398
  clpC Streptococcus pneumoniae D39

40.943

97.139

0.398
  clpC Streptococcus pneumoniae TIGR4

40.795

97.139

0.396
  clpC Streptococcus thermophilus LMG 18311

42.903

88.698

0.381
  clpC Streptococcus thermophilus LMD-9

42.903

88.698

0.381
  clpC Streptococcus mutans UA159

42.742

88.698

0.379
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

42.165

88.555

0.373