Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   SAFDA_RS02575 Genome accession   NZ_AP014942
Coordinates   542395..542964 (+) Length   189 a.a.
NCBI ID   WP_000872874.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDA209P     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 537395..547964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAFDA_RS02550 (SAFDA_0471) cysE 538608..539255 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  SAFDA_RS02555 (SAFDA_0472) cysS 539239..540639 (+) 1401 WP_000631974.1 cysteine--tRNA ligase -
  SAFDA_RS02560 (SAFDA_0473) - 540632..541036 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  SAFDA_RS02565 (SAFDA_0474) rlmB 541044..541790 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SAFDA_RS02570 (SAFDA_0475) - 541790..542314 (+) 525 WP_000664738.1 NYN domain-containing protein -
  SAFDA_RS02575 (SAFDA_0476) sigH 542395..542964 (+) 570 WP_000872874.1 sigma-70 family RNA polymerase sigma factor Regulator
  SAFDA_RS14310 rpmG 543079..543222 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  SAFDA_RS02580 (SAFDA_0477) secE 543278..543460 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  SAFDA_RS02585 (SAFDA_0478) nusG 543473..544021 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  SAFDA_RS02590 (SAFDA_0479) rplK 544202..544624 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  SAFDA_RS02595 (SAFDA_0480) rplA 544832..545524 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  SAFDA_RS02600 (SAFDA_0481) rplJ 545796..546296 (+) 501 WP_042727573.1 50S ribosomal protein L10 -
  SAFDA_RS02605 (SAFDA_0482) rplL 546339..546707 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  SAFDA_RS02610 (SAFDA_0483) - 546882..547490 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=67470 SAFDA_RS02575 WP_000872874.1 542395..542964(+) (sigH) [Staphylococcus aureus strain FDA209P]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCKQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=67470 SAFDA_RS02575 WP_000872874.1 542395..542964(+) (sigH) [Staphylococcus aureus strain FDA209P]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTAAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.413

100

0.984
  sigH Staphylococcus aureus MW2

98.413

100

0.984

Multiple sequence alignment