Detailed information NTG0674657

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: L9B60_RS15850
• Genome accession: NZ_CP094975
• Coordinates: 3460857..3462197 (-)
• Length: 446 a.a.
• NCBI ID: WP_249671598.1
• Uniprot ID: -
• Organism: Pseudomonas abieticivorans strain PIA16
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3455857..3467197

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L9B60_RS15835	-	3456044..3459235 (+)	3192	WP_249671595.1	pilus assembly protein	-
L9B60_RS15840	-	3459248..3459652 (+)	405	WP_249671596.1	type IV pilin protein	-
L9B60_RS15845	thiO	3459672..3460775 (+)	1104	WP_249671597.1	glycine oxidase ThiO	-
L9B60_RS15850	pilR	3460857..3462197 (-)	1341	WP_249671598.1	sigma-54 dependent transcriptional regulator	Regulator
L9B60_RS15855	pilS	3462200..3463792 (-)	1593	WP_283780516.1	PAS domain-containing sensor histidine kinase	Regulator
L9B60_RS15860	-	3463782..3464015 (-)	234	WP_249671599.1	PP0621 family protein	-
L9B60_RS15865	-	3464194..3465222 (-)	1029	WP_249671600.1	outer membrane protein assembly factor BamD	-
L9B60_RS15870	rluD	3465372..3466334 (+)	963	WP_249671601.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
L9B60_RS15875	pgeF	3466331..3467065 (+)	735	WP_249671602.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49648.02 Da
• Isoelectric Point: 6.5147

>NTDB_id=674657 L9B60_RS15850 WP_249671598.1 3460857..3462197(-) (pilR) [Pseudomonas abieticivorans strain PIA16]
MSPRQKVLIVDDEPDIRELLEITLGRMKLDTRSARNVKEARDWLGREAFDLCLTDMRLPDGTGLDLVQHIQQRHSQVPVA
MITAYGSLDTAINALKAGAFDFLTKPVDLARLRELVGTALRLNGPTGESPTIDDRLLGDSPPMLALRKQIGRLARSQAPV
YISGESGSGKELVARLIHEQGPRCDAPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVADL
PLTMQVKLLRAIQEKAIRSIGGQTETVVDVRVLCATHKDLNAEVEAGRFRQDLYYRLNVIELRVPSLRERREDIGLLAGK
VLKRLALGSGSPPVQISTQAMETLKGYRFPGNVRELENMLERAYTLCENERIEASDLRLAECSPGKDGGELDLTKIDNLE
DYLEGIERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=674657 L9B60_RS15850 WP_249671598.1 3460857..3462197(-) (pilR) [Pseudomonas abieticivorans strain PIA16]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATGATGAGCCGGATATCCGCGAACTCCTGGAAATCACCTTGGGGCGGAT
GAAGCTCGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGACTGGCTGGGCCGCGAAGCCTTTGACCTGTGCCTGA
CCGACATGCGCCTGCCCGATGGCACCGGGCTGGACCTGGTGCAACACATCCAGCAGCGCCATTCACAGGTGCCGGTGGCG
ATGATCACCGCCTACGGCAGCCTCGACACCGCCATTAACGCGCTGAAAGCCGGGGCCTTCGACTTCCTCACCAAGCCGGT
GGACCTGGCCCGCCTGCGCGAGCTGGTCGGCACCGCGTTGCGCCTCAATGGCCCCACGGGCGAGTCGCCCACCATCGATG
ACCGCCTGCTGGGCGACTCGCCGCCCATGCTGGCGCTGCGCAAGCAAATCGGCCGTCTGGCCCGCAGCCAGGCGCCGGTG
TACATCAGTGGCGAGTCGGGCAGCGGCAAGGAACTGGTCGCCCGGCTGATCCATGAGCAGGGGCCGCGCTGCGATGCGCC
GTTCGTGCCGGTCAACTGTGGCGCCATCCCGTCGGAGTTGATGGAGAGCGAGTTTTTTGGCCACCGCAAAGGCAGCTTCA
CCGGTGCCGTCGAAGACAAACCCGGGCTGTTCCAGGCCGCCCACGGTGGCACGCTGTTCCTCGACGAAGTCGCCGACCTG
CCGTTGACCATGCAGGTCAAGCTGCTGCGGGCGATCCAGGAAAAAGCCATCCGCAGCATCGGTGGGCAAACCGAAACCGT
GGTCGACGTGCGCGTGCTGTGTGCCACCCACAAGGATTTGAACGCCGAAGTCGAGGCCGGGCGCTTTCGCCAAGACCTCT
ACTACCGCCTGAACGTGATCGAGCTGCGCGTGCCGTCCTTGCGCGAGCGCCGCGAAGACATCGGCCTGCTGGCCGGCAAG
GTGCTCAAGCGCCTGGCCCTGGGCAGCGGCTCGCCACCGGTGCAAATCAGCACCCAGGCCATGGAAACCCTCAAGGGCTA
TCGCTTCCCCGGCAACGTGCGTGAGCTTGAGAACATGCTCGAACGCGCCTACACCCTGTGTGAGAACGAACGCATCGAAG
CCAGCGACCTGCGCTTGGCCGAATGCTCGCCGGGCAAGGACGGTGGTGAGCTGGACCTGACCAAGATCGACAACCTGGAA
GATTATTTGGAAGGGATCGAGCGCAAGCTGATCCTGCAGGCCTTGGAGGAGACTCGCTGGAACCGCACGGCGGCGGCGCA
GCGGTTGAATTTGTCGTTCCGGTCGATGCGTTACCGGTTGAAAAAATTGGGCTTGGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	80.587	99.327	0.8
pilR	Acinetobacter baumannii strain A118	49.237	100	0.507