Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   L9B60_RS15855 Genome accession   NZ_CP094975
Coordinates   3462200..3463792 (-) Length   530 a.a.
NCBI ID   WP_283780516.1    Uniprot ID   -
Organism   Pseudomonas abieticivorans strain PIA16     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3457200..3468792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L9B60_RS15840 - 3459248..3459652 (+) 405 WP_249671596.1 type IV pilin protein -
  L9B60_RS15845 thiO 3459672..3460775 (+) 1104 WP_249671597.1 glycine oxidase ThiO -
  L9B60_RS15850 pilR 3460857..3462197 (-) 1341 WP_249671598.1 sigma-54 dependent transcriptional regulator Regulator
  L9B60_RS15855 pilS 3462200..3463792 (-) 1593 WP_283780516.1 PAS domain-containing sensor histidine kinase Regulator
  L9B60_RS15860 - 3463782..3464015 (-) 234 WP_249671599.1 PP0621 family protein -
  L9B60_RS15865 - 3464194..3465222 (-) 1029 WP_249671600.1 outer membrane protein assembly factor BamD -
  L9B60_RS15870 rluD 3465372..3466334 (+) 963 WP_249671601.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  L9B60_RS15875 pgeF 3466331..3467065 (+) 735 WP_249671602.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58785.00 Da        Isoelectric Point: 7.6067

>NTDB_id=674658 L9B60_RS15855 WP_283780516.1 3462200..3463792(-) (pilS) [Pseudomonas abieticivorans strain PIA16]
MNAETLTPGGPQAQRMLRLYHLYRLTIGITLVLLISSDMDDRLLELAEGHWFRIGSWAYLLINLLLVVLVENLRYRGQVF
GVALFDILMLAGLFYAGGGTASGIGNLMVASVAMSNLLLRGRAGLMIAALGSIGVIYLTFYLNFSHPSPISNYVQASTLG
VLCFAVALLVQALTRLLRTSESLAEQRASAVTNLEELNALILQRMRTGILVLDTVNRVLLANEGALKLVGRYNLTGKLIT
AYSPDLIERLLQWQNNPTLRLPSLKFSPTGPTVQASFISLRRGDQQQTLVFLEDISQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAGQLLQESEALDSADRRLTQIIQDQSKRMNLIIENVLQLSRRREAAPQLLDLKAYLEQFLAEFRATARSH
EQLHLYVSDGPLETRMDPHQLTQVLTNLVENALRYSAHTHGRAQVWLNLFVEPTNGLPILDVLDDGPGVTPEQLEHLFEP
FFTTEAKGTGLGLYISRELCESNQAHLDYKPRERGGSCLRITFAHARKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=674658 L9B60_RS15855 WP_283780516.1 3462200..3463792(-) (pilS) [Pseudomonas abieticivorans strain PIA16]
GTGAACGCTGAAACCCTGACCCCGGGCGGGCCTCAGGCGCAGCGCATGCTGCGCCTGTATCACCTGTACCGCCTGACCAT
CGGTATCACCCTGGTGCTGCTGATATCCAGCGACATGGACGACCGCTTGCTGGAACTGGCCGAAGGCCACTGGTTTCGCA
TCGGCAGCTGGGCCTACCTGCTGATCAACCTGCTGTTGGTAGTGCTGGTGGAGAACCTGCGCTACCGCGGCCAGGTGTTT
GGCGTAGCGCTGTTCGACATCCTCATGCTGGCCGGGCTGTTCTACGCCGGGGGCGGCACCGCCAGCGGCATCGGCAACCT
GATGGTGGCGTCGGTGGCCATGAGCAACCTGCTGCTGCGCGGCCGCGCCGGCCTGATGATTGCCGCGCTGGGCTCGATCG
GCGTCATCTACCTGACCTTCTACCTCAACTTCAGCCACCCCTCGCCCATCAGCAACTACGTGCAGGCCAGCACCCTGGGC
GTGCTGTGTTTCGCGGTGGCGCTGTTGGTGCAAGCCCTGACGCGCCTGCTGCGCACCAGCGAAAGCCTGGCCGAGCAACG
CGCCAGCGCCGTGACCAACCTGGAAGAGCTCAACGCGCTGATTTTGCAACGCATGCGCACCGGCATCCTGGTACTGGACA
CCGTCAACCGGGTACTGCTGGCCAACGAGGGCGCGCTGAAACTGGTGGGCCGCTATAACCTCACCGGCAAACTGATCACT
GCCTACTCCCCCGACTTGATCGAGCGGCTGTTGCAGTGGCAGAACAACCCGACCCTGCGCCTGCCCAGCCTGAAATTCAG
CCCCACCGGGCCCACGGTGCAAGCCAGCTTCATTTCCCTGCGCCGTGGCGACCAGCAGCAAACCCTGGTGTTTCTAGAAG
ACATTTCGCAAATCGCCCAGCAGGCCCAGCAACTCAAGCTGGCCGCCCTGGGCCGCCTGACCGCTGGCATCGCCCACGAA
ATTCGCAACCCGCTGGGCGCCATCAGCCACGCCGGCCAGCTGCTGCAAGAGTCCGAAGCCCTGGACAGTGCCGATCGGCG
CCTGACCCAAATCATCCAGGACCAGTCCAAGCGGATGAACCTGATCATCGAAAACGTGCTGCAGCTGTCCCGTCGCCGCG
AGGCCGCACCGCAGTTACTCGACCTCAAGGCGTACCTGGAACAGTTTCTCGCCGAGTTCCGCGCCACCGCCCGCTCCCAC
GAACAGTTGCACCTGTACGTCAGCGACGGCCCACTCGAAACCCGCATGGACCCGCACCAACTGACCCAAGTGCTGACCAA
CCTGGTGGAAAACGCCCTGCGCTACAGCGCCCACACCCATGGCCGCGCCCAGGTGTGGCTGAACCTGTTCGTGGAACCGA
CCAACGGTCTGCCGATCCTCGACGTTCTCGACGACGGCCCCGGGGTTACGCCCGAACAACTGGAGCACCTGTTCGAGCCG
TTTTTTACCACCGAGGCCAAAGGCACCGGGCTTGGGCTGTATATTTCCCGGGAGCTGTGCGAAAGCAATCAGGCCCACCT
AGACTACAAACCACGTGAAAGAGGCGGCAGTTGCCTGCGCATCACTTTCGCCCATGCACGCAAACTGAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

62.83

100

0.628