Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   MTZ49_RS06290 Genome accession   NZ_CP094972
Coordinates   1308714..1310117 (-) Length   467 a.a.
NCBI ID   WP_264747497.1    Uniprot ID   -
Organism   Entomomonas sp. E2T0     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1303714..1315117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTZ49_RS06270 (MTZ49_06265) ahcY 1303869..1305266 (-) 1398 WP_264747493.1 adenosylhomocysteinase -
  MTZ49_RS06275 (MTZ49_06270) - 1305577..1305987 (-) 411 WP_264747494.1 hypothetical protein -
  MTZ49_RS06280 (MTZ49_06275) - 1306138..1307649 (-) 1512 WP_264747495.1 ATP-binding cassette domain-containing protein -
  MTZ49_RS06285 (MTZ49_06280) - 1307831..1308697 (-) 867 WP_264747496.1 LysR family transcriptional regulator -
  MTZ49_RS06290 (MTZ49_06285) pilR 1308714..1310117 (-) 1404 WP_264747497.1 sigma-54-dependent transcriptional regulator Regulator
  MTZ49_RS06295 (MTZ49_06290) - 1310129..1311739 (-) 1611 WP_264747498.1 two-component system sensor histidine kinase NtrB -
  MTZ49_RS06300 (MTZ49_06295) - 1311741..1311965 (-) 225 WP_264747499.1 PP0621 family protein -
  MTZ49_RS06305 (MTZ49_06300) - 1312047..1312757 (-) 711 WP_264747500.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  MTZ49_RS06310 (MTZ49_06305) - 1312769..1313101 (-) 333 WP_264747501.1 phosphoribosyl-ATP diphosphatase -
  MTZ49_RS06315 (MTZ49_06310) hisI 1313106..1313498 (-) 393 WP_264747502.1 phosphoribosyl-AMP cyclohydrolase -
  MTZ49_RS06320 (MTZ49_06315) ubiB 1313507..1315114 (-) 1608 WP_264747503.1 ubiquinone biosynthesis regulatory protein kinase UbiB -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52123.81 Da        Isoelectric Point: 5.0782

>NTDB_id=674624 MTZ49_RS06290 WP_264747497.1 1308714..1310117(-) (pilR) [Entomomonas sp. E2T0]
MTQSKILIIDDEPDIRELLEITLGRLKLATQSVGTLKDATEMLKKETFDLCLTDMKLPDGDGLDFIEYTQQHYPQMPIAM
ITAHGSMDTAIIALKTGAFDYLTKPIDLNHLREIIKSALNLTTAKVDNIPFEQQFLGESPLVQALRNQVNKVARSQAPVY
INGESGTGKEVIARLVHLQGSRAKQPFIAINCGAIPSELMESEFFGHRKGSFTGANQDKIGLFQAAQGGTLFLDEVADLP
LSMQVKLLRAIQEKSIRAIGDQQEQPTDVRILCATHADLAARVVEGKFRQDLYYRLNVIELKIPPLRAHKEDIPLLAEAL
LKRANYDVKLSDEAIEKLLTYEFPGNVRELENILERAYTLCEQGVIRPDDLRFASMLPSDSSAISTVAINEPIAQSTPSQ
PQVNSVANDTLPNLVDIGNLEEYLEAVERKILTQALEENRWNRTAAAERLGLSFRSMRYRLKKLGID

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=674624 MTZ49_RS06290 WP_264747497.1 1308714..1310117(-) (pilR) [Entomomonas sp. E2T0]
ATGACACAATCAAAAATTTTAATTATTGATGATGAACCTGATATTCGAGAACTACTTGAAATTACTTTAGGTCGACTAAA
ATTAGCTACACAATCAGTAGGCACTCTAAAAGACGCAACTGAAATGCTAAAGAAAGAAACATTTGATCTTTGCCTAACAG
ATATGAAATTACCTGATGGTGATGGCCTCGATTTTATTGAGTATACTCAGCAACATTATCCACAAATGCCTATTGCTATG
ATTACAGCACATGGCAGTATGGACACGGCTATTATCGCGTTAAAAACTGGGGCATTTGATTATTTAACAAAACCTATTGA
TTTAAACCATTTACGGGAAATTATTAAATCAGCACTTAATCTGACTACAGCCAAAGTCGATAATATCCCTTTTGAACAAC
AATTCCTTGGCGAATCTCCTCTTGTTCAAGCACTACGTAACCAAGTAAATAAAGTAGCACGTAGCCAAGCACCTGTTTAT
ATTAATGGTGAGTCTGGAACAGGTAAAGAAGTAATAGCTCGACTTGTTCATTTACAAGGATCTAGAGCAAAACAACCTTT
TATTGCCATCAACTGTGGCGCCATTCCCTCAGAGTTAATGGAAAGTGAATTCTTTGGTCATCGCAAAGGTAGCTTTACAG
GTGCCAACCAAGATAAAATAGGCCTATTCCAAGCGGCACAAGGTGGAACATTATTTTTAGATGAGGTGGCGGATTTACCA
TTGAGTATGCAAGTTAAACTATTGCGTGCTATTCAAGAAAAATCTATTCGTGCCATTGGTGATCAACAAGAACAACCTAC
TGATGTACGTATTCTTTGTGCTACTCATGCAGACTTAGCTGCCAGAGTTGTAGAAGGTAAGTTTAGACAAGACCTTTATT
ATCGCCTTAATGTTATCGAATTAAAAATTCCACCATTACGTGCTCACAAAGAAGATATTCCACTCTTGGCTGAAGCACTG
TTAAAACGTGCTAACTACGATGTTAAGCTATCTGATGAAGCCATTGAAAAACTGCTAACATATGAATTTCCAGGTAATGT
TCGAGAACTCGAAAATATACTTGAGCGAGCTTATACACTCTGTGAACAGGGTGTAATTAGGCCTGACGACCTCCGTTTTG
CTAGTATGTTGCCAAGTGATTCATCAGCTATTTCTACTGTAGCTATTAACGAGCCAATTGCTCAATCAACACCATCACAA
CCTCAAGTTAACTCAGTAGCAAATGATACACTACCTAATTTAGTAGATATTGGAAACTTAGAAGAATACCTTGAAGCGGT
GGAAAGAAAAATCTTAACACAAGCACTTGAAGAAAACCGTTGGAATAGAACGGCCGCAGCTGAACGCTTAGGTTTATCTT
TTCGCTCTATGCGTTATCGATTAAAAAAATTAGGTATTGATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-115)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Bacterial regulatory protein, Fis family (HTH_8)

(424-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.559

100

0.642
  pilR Acinetobacter baumannii strain A118

47.992

100

0.486
  luxO Vibrio cholerae strain A1552

37.716

99.358

0.375