Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LEN_RS05300 Genome accession   NZ_AP014940
Coordinates   1240339..1241748 (-) Length   469 a.a.
NCBI ID   WP_074862710.1    Uniprot ID   A0AAU9ACJ8
Organism   Lysobacter enzymogenes strain M497-1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1235339..1246748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEN_RS05280 (LEN_1086) - 1235428..1237329 (-) 1902 WP_096376949.1 hypothetical protein -
  LEN_RS05285 (LEN_1087) - 1237361..1237774 (-) 414 WP_096376950.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  LEN_RS25830 (LEN_1088) - 1237919..1238344 (-) 426 WP_096376951.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  LEN_RS25835 (LEN_1089) pilA 1239249..1239674 (-) 426 WP_096376952.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LEN_RS05300 (LEN_1090) pilR 1240339..1241748 (-) 1410 WP_074862710.1 sigma-54 dependent transcriptional regulator Regulator
  LEN_RS05305 (LEN_1091) - 1241846..1243471 (-) 1626 WP_096376953.1 ATP-binding protein -
  LEN_RS05310 (LEN_1092) sucC 1243862..1245028 (+) 1167 WP_074862717.1 ADP-forming succinate--CoA ligase subunit beta -
  LEN_RS05315 (LEN_1093) sucD 1245041..1245916 (+) 876 WP_074862720.1 succinate--CoA ligase subunit alpha -
  LEN_RS05320 (LEN_1094) - 1246032..1246322 (+) 291 WP_096376954.1 CopG family transcriptional regulator -
  LEN_RS05325 (LEN_1095) - 1246319..1246615 (+) 297 WP_096376955.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 50774.15 Da        Isoelectric Point: 7.1124

>NTDB_id=67450 LEN_RS05300 WP_074862710.1 1240339..1241748(-) (pilR) [Lysobacter enzymogenes strain M497-1]
MAETRSALVVDDERDIRELLVMTLGRMGLRCDTASGLNEARSQLLRNRYDLCLTDMRLPDGSGMDLVAEISQKYPNTPVA
MITAFGNVEAAVEALKAGAFDFVAKPVDLSVLRDLVRHALELHETRRSASEAVGSRLYGESPAMIKLRQTIGKVARSQAP
VYIAGESGVGKELVARTIHSEGGRADGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAADGGTLFLDEVAE
LPLAMQVKLLRAIQEKSIRPVGAQAEVTVDVRILSATHKDLAALVAEGRFRQDLYYRINVIELRVPPLRERLDDLPGLAA
KILHRLAGNQGRPVPRLGDDALEALRAYNFPGNVRELENILERALALAEGETLSASDLRLPRLATQTAPAATAAPSAGQP
PQPAGAVDPRTISPRDTATSALPSYIEEIERAAIQQALQENRYNKTRTAAALGITFRALRYKLKKLGID

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=67450 LEN_RS05300 WP_074862710.1 1240339..1241748(-) (pilR) [Lysobacter enzymogenes strain M497-1]
ATGGCTGAAACCCGTAGTGCATTGGTAGTAGACGACGAACGCGATATCCGCGAGTTGCTCGTCATGACGTTGGGCCGCAT
GGGCCTGCGTTGCGATACCGCGTCGGGCCTCAACGAGGCTCGCAGCCAGCTGCTGCGCAATCGTTACGATTTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCTCGGGCATGGACCTGGTCGCCGAGATCAGCCAGAAGTATCCGAACACGCCGGTGGCG
ATGATCACCGCGTTCGGCAACGTCGAGGCCGCGGTGGAAGCGCTCAAGGCCGGCGCGTTCGACTTCGTCGCCAAGCCCGT
GGACCTGTCGGTGCTGCGCGACCTGGTCCGGCACGCGCTGGAACTGCACGAAACCCGGCGCAGCGCCAGCGAAGCGGTCG
GCTCGCGCCTGTACGGCGAATCGCCGGCGATGATCAAGCTGCGCCAGACCATCGGCAAGGTCGCGCGCAGCCAGGCGCCG
GTGTACATCGCGGGCGAATCGGGCGTGGGCAAGGAACTGGTCGCGCGCACCATCCATTCCGAAGGCGGGCGCGCCGACGG
ACCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAATTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCT
TCACCGGCGCCCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCCGACGGCGGCACCTTGTTCCTCGACGAGGTCGCCGAG
CTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGATCCGCCCGGTCGGCGCCCAGGCCGAGGT
CACGGTCGACGTGCGCATCCTCTCGGCCACCCACAAGGATCTGGCCGCCCTGGTCGCCGAAGGCCGCTTCCGCCAGGACT
TGTACTACCGCATCAACGTGATCGAGCTGCGCGTGCCGCCGCTGCGCGAGCGCCTGGACGACCTGCCCGGCCTGGCCGCG
AAGATCCTCCACCGCCTCGCCGGCAACCAGGGCCGGCCGGTGCCGCGCCTGGGCGACGACGCGCTCGAGGCGCTGCGCGC
CTACAACTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGGCGAAACCCTCA
GCGCCAGCGACCTGCGCCTGCCGCGCCTGGCCACCCAGACCGCCCCGGCCGCGACCGCCGCGCCCAGCGCCGGCCAGCCG
CCGCAGCCGGCCGGCGCCGTCGACCCGCGCACGATCAGCCCGCGCGACACCGCCACCAGCGCGCTTCCTTCTTATATCGA
AGAGATCGAGCGCGCCGCGATCCAGCAGGCGCTGCAGGAAAACCGCTACAACAAGACCCGCACCGCGGCGGCGCTGGGGA
TCACCTTCCGGGCGTTGCGGTACAAGCTCAAGAAGCTTGGGATCGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(426-466)

Response regulator receiver domain (Response_reg)

(8-116)

Sigma-54 interaction domain (Sigma54_activat)

(138-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.734

99.36

0.633
  pilR Acinetobacter baumannii strain A118

49.263

100

0.499

Multiple sequence alignment